mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 2,857 | G→A | V19V (GTG→GTA) | thrB → | homoserine kinase |
| RA | 13,942 | G→A | V594I (GTT→ATT) | dnaK → | chaperone protein DnaK |
| RA | 14,424 | G→A | G86D (GGC→GAC) | dnaJ → | chaperone protein DnaJ |
| RA | 23,088 | G→A | G233D (GGC→GAC) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 26,614 | G→A | G113D (GGC→GAC) | ispH → | 4‑hydroxy‑3‑methylbut‑2‑enyl diphosphate reductase |
| RA | 27,781 | G→A | E163E (GAG→GAA) | rihC → | ribonucleoside hydrolase RihC |
| RA | 35,476 | G→A | G229G (GGC→GGT) | caiD ← | crotonobetainyl‑CoA hydratase |
| RA | 51,290 | C→T | G106D (GGC→GAC) | apaG ← | DUF525 domain‑containing protein ApaG |
| RA | 93,591 | C→T | G142G (GGC→GGT) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase |
| RA | 109,960 | G→A | R561H (CGT→CAT) | secA → | protein translocation ATPase |
| RA | 177,404 | A→T | L74Q (CTG→CAG) | yadS ← | PF03458 family protein YadS |
| RA | 186,539 | C→T | T704T (ACG→ACA) | glnD ← | protein‑PII uridylyltransferase/uridylyl‑removing enzyme |
| RA | 202,615 | C→T | S19L (TCA→TTA) | lpxA → | acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase |
| RA | 246,747 | G→T | S12S (TCG→TCT) | yafL → | NlpC/P60 family protein YafL |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 280,709 | C→T | W9* (TGG→TGA) | yagB ← | orphan antitoxin YagB |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| RA | 294,093 | G→A | P236L (CCT→CTT) | yagM ← | protein YagM |
| RA | 313,543 | G→A | intergenic (‑301/‑1748) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| JC JC | 332,367 | IS2 (–) +5 bp | [pdeL] | [pdeL] | |
| RA | 339,935 | C→T | A56V (GCC→GTC) | yahH → | putative uncharacterized protein YahH |
| RA | 339,958 | G→A | D64N (GAC→AAC) | yahH → | putative uncharacterized protein YahH |
| RA | 364,850 | G→A | Q486* (CAG→TAG) | lacZ ← | beta‑galactosidase |
| RA | 368,583 | C→T | intergenic (‑163/‑28) | mhpR ← / → mhpA | DNA‑binding transcriptional activator MhpR/3‑(3‑hydroxyphenyl)propanoate hydroxylase |
| RA | 371,176 | G→A | E300E (GAG→GAA) | mhpB → | 3‑carboxyethylcatechol 2,3‑dioxygenase |
| RA | 371,683 | C→T | P149S (CCG→TCG) | mhpC → | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioate hydrolase |
| RA | 374,464 | C→T | H199H (CAC→CAT) | mhpE → | 4‑hydroxy‑2‑oxovalerate aldolase |
| RA | 378,493 | C→T | G360D (GGC→GAC) | frmA ← | S‑(hydroxymethyl)glutathione dehydrogenase |
| RA | 385,763 | C→T | P178S (CCG→TCG) | tauA → | taurine ABC transporter periplasmic binding protein |
| RA | 395,831 | G→A | R153C (CGT→TGT) | ampH ← | peptidoglycan DD‑carboxypeptidase/peptidoglycan DD‑endopeptidase |
| RA | 397,530 | G→A | V298I (GTA→ATA) | sbmA → | peptide antibiotic/peptide nucleic acid transporter |
| RA | 401,991 | C→T | A82V (GCC→GTC) | phoA → | alkaline phosphatase |
| RA | 402,739 | G→A | L331L (TTG→TTA) | phoA → | alkaline phosphatase |
| RA | 403,368 | C→T | Q30* (CAA→TAA) | psiF → | phosphate starvation‑inducible protein PsiF |
| RA | 413,051 | C→T | G901G (GGG→GGA) | sbcC ← | ATP‑dependent structure‑specific DNA nuclease ‑ SbcC subunit |
| RA | 428,681 | C→T | L345L (CTC→CTT) | secD → | Sec translocon accessory complex subunit SecD |
| RA | 431,286 | G→A | A243V (GCT→GTT) | tsx ← | nucleoside‑specific channel‑forming protein Tsx |
| RA | 431,591 | G→A | R141R (CGC→CGT) | tsx ← | nucleoside‑specific channel‑forming protein Tsx |
| RA | 435,874 | G→A | A81T (GCC→ACC) | thiL → | thiamine monophosphate kinase |
| RA | 437,421 | G→A | L239F (CTC→TTC) | yajO ← | 1‑deoxyxylulose‑5‑phosphate synthase YajO |
| RA | 437,436 | C→T | E234K (GAG→AAG) | yajO ← | 1‑deoxyxylulose‑5‑phosphate synthase YajO |
| RA | 439,909 | C→T | G90E (GGA→GAA) | dxs ← | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| RA | 441,092 | G→A | P4S (CCG→TCG) | ispA ← | geranyl diphosphate/farnesyl diphosphate synthase |
| RA | 441,907 | G→A | S120N (AGC→AAC) | thiI → | tRNA uridine 4‑sulfurtransferase |
| RA | 447,020 | G→A | A229V (GCT→GTT) | cyoE ← | heme O synthase |
| RA | 448,014 | G→A | S11S (TCC→TCT) | cyoD ← | cytochrome bo3 subunit 4 |
| RA | 451,013 | G→A | P200S (CCC→TCC) | cyoA ← | cytochrome bo3 subunit 2 |
| RA | 455,171 | C→T | R13R (CGC→CGT) | tig → | trigger factor |
| RA | 459,694 | G→A | E269E (GAG→GAA) | lon → | Lon protease |
| RA | 460,576 | G→A | K563K (AAG→AAA) | lon → | Lon protease |
| RA | 462,097 | C→T | S61S (AGC→AGT) | ppiD → | periplasmic folding chaperone |
| RA | 464,112 | G→A | G59D (GGC→GAC) | ybaV → | helix‑hairpin‑helix 3 family protein |
| RA | 466,723 | G→A | A197V (GCA→GTA) | ybaE ← | uncharacterized protein YbaE |
| RA | 467,244 | G→A | T23T (ACC→ACT) | ybaE ← | uncharacterized protein YbaE |
| RA | 474,558 | C→T | A202T (GCT→ACT) | tesB ← | acyl‑CoA thioesterase II |
| RA | 478,694 | G→A | intergenic (‑77/+87) | pdeB ← / ← ylaC | c‑di‑GMP phosphodiesterase PdeB/putative inner membrane protein |
| RA | 480,295 | 2 bp→AA | coding (13‑14/219 nt) | hha ← | hemolysin expression‑modulating protein Hha |
| RA | 498,094 | G→A | G14S (GGT→AGT) | hemH → | ferrochelatase |
| RA | 501,402 | C→T | S426S (AGC→AGT) | gsk → | inosine/guanosine kinase |
| RA | 509,329 | G→A | A684V (GCC→GTC) | copA ← | Cu(+) exporting P‑type ATPase |
| RA | 509,517 | C→T | E621E (GAG→GAA) | copA ← | Cu(+) exporting P‑type ATPase |
| RA | 510,530 | G→A | L284F (CTT→TTT) | copA ← | Cu(+) exporting P‑type ATPase |
| RA | 511,514 | G→A | intergenic (‑135/‑127) | copA ← / → glsA | Cu(+) exporting P‑type ATPase/glutaminase 1 |
| RA | 513,659 | G→A | A362T (GCG→ACG) | ybaT → | putative transporter YbaT |
| RA | 516,955 | C→T | P125S (CCT→TCT) | fetB → | putative iron ABC exporter membrane subunit FetB |
| RA | 527,162 | C→T | T1301M (ACG→ATG) | rhsD → | protein RhsD |
| RA | 537,976 | C→T | A115V (GCC→GTC) | ybbW → | putative allantoin transporter |
| RA | 544,586 | C→T | R236H (CGT→CAT) | allC ← | allantoate amidohydrolase |
| RA | 553,298 | C→T | V215I (GTA→ATA) | lpxH ← | UDP‑2,3‑diacylglucosamine diphosphatase |
| RA | 554,298 | C→T | G47D (GGC→GAC) | ppiB ← | peptidyl‑prolyl cis‑trans isomerase B |
| RA | 555,459 | C→T | Y283Y (TAC→TAT) | cysS → | cysteine‑‑tRNA ligase |
| RA | 576,410 | G→A | pseudogene (416/1040 nt) | nmpC ← | putative outer membrane porin NmpC |
| RA | 579,076 | G→A | intergenic (‑183/+108) | borD ← / ← ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| RA | 612,410 | G→A | P29S (CCT→TCT) | fepA ← | ferric enterobactin outer membrane transporter |
| RA | 622,820 | G→A | G174D (GGC→GAC) | entS → | enterobactin exporter EntS |
| RA | 631,537 | G→A | W548* (TGG→TGA) | cstA → | pyruvate transporter CstA |
| RA | 633,227 | C→T | G84D (GGT→GAT) | hcxA ← | hydroxycarboxylate dehydrogenase A |
| RA | 690,948 | G→A | V279V (GTC→GTT) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 700,038 | G→A | H97Y (CAT→TAT) | umpH ← | UMP phosphatase |
| RA | 700,628 | C→T | G323S (GGT→AGT) | nagC ← | DNA‑binding transcriptional dual regulator NagC |
| RA | 809,217 | 2 bp→AG | coding (40‑41/1290 nt) | bioA ← | adenosylmethionine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | 869,418 | G→A | R3K (AGA→AAA) | gsiB → | glutathione ABC transporter periplasmic binding protein |
| RA | 871,045 | G→A | V27I (GTC→ATC) | gsiC → | glutathione ABC transporter membrane subunit GsiC |
| RA | 873,115 | G→A | R46H (CGC→CAC) | pdeI → | putative c‑di‑GMP phosphodiesterase PdeI |
| RA | 884,344 | G→A | G224G (GGG→GGA) | mdfA → | multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| RA | 897,642 | G→A | V187I (GTC→ATC) | potI → | putrescine ABC transporter membrane subunit PotI |
| RA | 909,012 | G→A | L95L (CTG→TTG) | ltaE ← | low‑specificity L‑threonine aldolase |
| RA | 914,713 | C→T | A49T (GCG→ACG) | lysO ← | L‑lysine/thialysine exporter |
| RA | 924,350 | C→T | P363S (CCG→TCG) | clpA → | ATP‑dependent Clp protease ATP‑binding subunit ClpA |
| RA | 968,837 | G→A | D158N (GAT→AAT) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 987,152 | G→T | intergenic (‑170/+433) | ompF ← / ← asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| RA | 987,159 | T→A | intergenic (‑177/+426) | ompF ← / ← asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| RA | 1,030,625 | C→T | G15D (GGC→GAC) | tusE ← | sulfur transfer protein TusE |
| RA | 1,040,126 | G→T | L277L (CTG→CTT) | appB → | cytochrome bd‑II subunit 2 |
| RA | 1,070,014 | A→G | L114P (CTG→CCG) | rutF ← | FMN reductase RutF |
| RA | 1,106,559 | G→A | A69T (GCA→ACA) | clsC → | cardiolipin synthase C |
| RA | 1,109,816 | G→A | G161D (GGT→GAT) | opgG → | osmoregulated periplasmic glucans biosynthesis protein G |
| RA | 1,111,727 | 2 bp→TT | coding (865‑866/2544 nt) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,111,867 | G→A | W335* (TGG→TGA) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,113,805 | G→A | *76* (TGA→TAA) | yceK → | DUF1375 domain‑containing lipoprotein YceK |
| RA | 1,115,668 | G→A | R305R (CGC→CGT) | lpxL ← | lauroyl acyltransferase |
| RA | 1,125,322 | G→A | S2F (TCC→TTC) | mdtH ← | multidrug efflux pump MdtH |
| RA | 1,127,608 | G→A | G268D (GGC→GAC) | yceM → | putative oxidoreductase YceM |
| RA | 1,132,149 | G→A | G99D (GGC→GAC) | flgD → | flagellar biosynthesis, initiation of hook assembly |
| RA | 1,132,865 | G→A | G98R (GGA→AGA) | flgE → | flagellar hook protein FlgE |
| RA | 1,135,235 | G→A | Q169Q (CAG→CAA) | flgG → | flagellar basal‑body rod protein FlgG |
| RA | 1,136,053 | G→A | V164M (GTG→ATG) | flgH → | flagellar L‑ring protein |
| RA | 1,140,714 | G→A | A228T (GCG→ACG) | flgL → | flagellar hook‑filament junction protein 2 |
| RA | 1,150,616 | C→T | L297L (CTG→TTG) | fabD → | [acyl‑carrier‑protein] S‑malonyltransferase |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,183,662 | G→A | Y261Y (TAC→TAT) | potB ← | spermidine preferential ABC transporter membrane subunit PotB |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,276,230 | C→T | P463P (CCG→CCA) | narX ← | sensor histidine kinase NarX |
| RA | 1,286,364 | C→T | G172G (GGC→GGT) | narI → | nitrate reductase A subunit gamma |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| MC JC | 1,302,147 | Δ5 bp | coding (966‑970/1632 nt) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,310,770 | A→G | H32H (CAT→CAC) | yciI ← | protein YciI |
| RA | 1,315,384 | G→A | Y129Y (TAC→TAT) | yciF ← | DUF892 domain‑containing protein YciF |
| RA | 1,317,129 | G→A | Q32* (CAG→TAG) | trpA ← | tryptophan synthase subunit alpha |
| RA | 1,320,907 | C→T | D160N (GAT→AAT) | trpD ← | anthranilate synthase subunit TrpD |
| RA | 1,322,325 | G→A | L208F (CTC→TTC) | trpE ← | anthranilate synthase subunit TrpE |
| RA | 1,327,979 | C→T | D127N (GAT→AAT) | btuR ← | cobinamide/cobalamin adenosyltransferase |
| RA | 1,329,672 | C→T | A114V (GCC→GTC) | sohB → | S49 peptidase family protein |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,340,381 | G→A | V47I (GTA→ATA) | lapA → | lipopolysaccharide assembly protein A |
| RA | 1,340,390 | G→A | A50T (GCT→ACT) | lapA → | lipopolysaccharide assembly protein A |
| RA | 1,341,035 | G→A | A160T (GCA→ACA) | lapB → | lipopolysaccharide assembly protein B |
| RA | 1,351,182 | C→T | intergenic (‑143/+225) | fabI ← / ← ycjD | enoyl‑[acyl‑carrier‑protein] reductase/DUF559 domain‑containing protein YcjD |
| RA | 1,351,623 | G→A | Y46Y (TAC→TAT) | ycjD ← | DUF559 domain‑containing protein YcjD |
| RA | 1,356,258 | G→A | P285S (CCG→TCG) | sapA ← | putative periplasmic binding protein SapA |
| RA | 1,356,932 | G→A | T60I (ACC→ATC) | sapA ← | putative periplasmic binding protein SapA |
| RA | 1,357,202 | C→T | intergenic (‑92/+221) | sapA ← / ← ymjA | putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA |
| RA | 1,358,331 | C→T | G286D (GGC→GAC) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,362,490 | G→A | intergenic (+22/‑253) | puuR → / → puuC | DNA‑binding transcriptional repressor PuuR/gamma‑glutamyl‑gamma‑aminobutyraldehyde dehydrogenase |
| RA | 1,363,627 | C→T | F295F (TTC→TTT) | puuC → | gamma‑glutamyl‑gamma‑aminobutyraldehyde dehydrogenase |
| RA | 1,366,277 | G→A | G243D (GGC→GAC) | puuE → | 4‑aminobutyrate aminotransferase PuuE |
| RA | 1,366,433 | G→A | G295D (GGC→GAC) | puuE → | 4‑aminobutyrate aminotransferase PuuE |
| RA | 1,369,455 | G→A | K21K (AAG→AAA) | pspD → | phage shock protein D |
| RA | 1,370,821 | C→T | Y202Y (TAC→TAT) | ycjM → | glucosylglycerate phosphorylase |
| RA | 1,372,825 | G→A | G306E (GGG→GAG) | ycjN → | putative ABC transporter periplasmic binding protein YcjN |
| RA | 1,374,201 | G→A | G38S (GGC→AGC) | ycjP → | putative ABC transporter membrane subunit YcjP |
| RA | 1,376,784 | G→A | A251T (GCG→ACG) | ycjR → | 3‑dehydro‑D‑guloside 4‑epimerase |
| RA | 1,380,629 | G→A | G161D (GGC→GAC) | ycjU → | beta‑phosphoglucomutase |
| RA | 1,383,388 | G→A | P192S (CCG→TCG) | ycjW ← | DNA‑binding transcriptional repressor YcjW |
| RA | 1,399,042 | G→A | S162L (TCG→TTG) | fnr ← | DNA‑binding transcriptional dual regulator FNR |
| RA | 1,400,978 | C→T | G266S (GGT→AGT) | abgT ← | p‑aminobenzoyl glutamate:H(+) symporter |
| RA | 1,410,100 | G→A | R197Q (CGA→CAA) | dbpA → | ATP‑dependent RNA helicase DbpA |
| RA | 1,416,797 | G→A | P197L (CCT→CTT) | recE ← | exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific |
| MC JC | 1,428,795 | Δ115,337 bp | IS5‑mediated | lomR–narU | 104 genes lomR, stfR, tfaR, pinR, ynaE, ynaM, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD2, insC2, ydbA, insI2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, azoR, hrpA, ydcF, aldA, cybB, rydC, ydcA, yncP, hokB, mokB, sokB, trg, ydcI, ydcJ, opgD, ydcH, rimL, ydcK, tehA, tehB, ydcL, insQ, ydcO, sutR, rlhA, yncJ, hicA, hicB, ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, ydcD, yncO, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU |
| RA | 1,554,719 | C→T | Q317Q (CAG→CAA) | maeA ← | malate dehydrogenase (oxaloacetate‑decarboxylating) |
| RA | 1,603,321 | C→T | L101L (CTC→CTT) | lsrC → | Autoinducer‑2 ABC transporter membrane subunit LsrC |
| RA | 1,604,223 | C→T | G59G (GGC→GGT) | lsrD → | Autoinducer‑2 ABC transporter membrane subunit LsrD |
| RA | 1,604,840 | C→T | S265F (TCC→TTC) | lsrD → | Autoinducer‑2 ABC transporter membrane subunit LsrD |
| RA | 1,605,533 | C→T | S161S (AGC→AGT) | lsrB → | Autoinducer‑2 ABC transporter periplasmic binding protein |
| RA | 1,606,464 | C→T | A122V (GCC→GTC) | lsrF → | 3‑hydroxy‑2,4‑pentadione 5‑phosphate thiolase |
| RA | 1,608,089 | C→T | A248A (GCC→GCT) | tam → | trans‑aconitate 2‑methyltransferase |
| RA | 1,628,147 | G→A | D211N (GAT→AAT) | ydfG → | 3‑hydroxy acid dehydrogenase YdfG |
| JC JC | 1,633,913 | IS5 (–) +4 bp | coding (292‑295/591 nt) | pinQ → | putative recombinase PinQ |
| RA | 1,643,554 | C→T | E251K (GAA→AAA) | ydfU ← | protein YdfU |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,645,875 | C→T | intergenic (‑3/‑22) | relB ← / → ydfV | antitoxin/DNA‑binding transcriptional repressor RelB/protein YdfV |
| RA | 1,648,720 | C→T | A19V (GCC→GTC) | ydfB → | uncharacterized protein YdfB |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,677,341 | C→T | G188D (GGC→GAC) | pntA ← | pyridine nucleotide transhydrogenase subunit alpha |
| RA | 1,712,661 | A→T | intergenic (+503/‑108) | nth → / → dtpA | endonuclease III/dipeptide/tripeptide:H(+) symporter DtpA |
| RA | 1,721,136 | C→T | L38F (CTT→TTT) | ydhI → | DUF1656 domain‑containing protein YdhI |
| RA | 1,743,057 | G→A | D62D (GAC→GAT) | ribC ← | riboflavin synthase |
| RA | 1,776,715 | A→T | S377C (AGT→TGT) | ydiF → | putative acetate‑CoA transferase YdiF |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| JC JC | 1,907,451 | IS2 (+) +5 bp | coding (137‑141/144 nt) | yobF ← | DUF2527 domain‑containing protein YobF |
| RA | 1,919,728 | C→T | T740I (ACT→ATT) | letB → | lipophilic envelope spanning tunnel |
| RA | 1,978,245 | A→C | intergenic (‑48/+273) | flhD ← / ← insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB |
| RA | 1,986,333 | A→G | intergenic (‑205/‑592) | araF ← / → ftnB | arabinose ABC transporter periplasmic binding protein/putative ferritin‑like protein |
| RA | 1,987,499 | C→A | intergenic (+71/+8) | ftnB → / ← yecJ | putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ |
| RA | 1,991,071 | C→T | M183I (ATG→ATA) | yecA ← | putative iron‑binding protein YecA |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| JC JC | 2,174,817 | IS1 (+) +9 bp | coding (225‑233/453 nt) | gatA ← | galactitol‑specific PTS enzyme IIA component |
| RA | 2,188,087 | T→C | T110A (ACG→GCG) | yehA ← | putative fimbrial adhesin YehA |
| RA | 2,195,035 | G→A | A246T (GCG→ACG) | metG → | methionine‑‑tRNA ligase |
| RA | 2,257,606 | C→T | Q254Q (CAG→CAA) | psuG ← | pseudouridine‑5'‑phosphate glycosidase |
| RA | 2,270,933 | C→T | P70S (CCG→TCG) | pdeN → | putative c‑di‑GMP phosphodiesterase PdeN |
| RA | 2,286,554 | C→T | pseudogene (2361/2525 nt) | yejO ← | adhesin‑like autotransporter YejO |
| RA | 2,384,808 | C→T | K305K (AAG→AAA) | yfbK ← | IPR002035/DUF3520 domain‑containing protein YfbK |
| JC JC | 2,406,778 | IS5 (+) +4 bp | intergenic (‑137/‑780) | lrhA ← / → alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA |
| RA | 2,410,419 | G→A | L312L (CTG→TTG) | yfbS ← | putative transporter YfbS |
| RA | 2,415,485 | G→A | G247S (GGC→AGC) | pta → | phosphate acetyltransferase |
| RA | 2,484,827 | C→T | L152F (CTT→TTT) | evgS → | sensor histidine kinase EvgS |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| RA | 2,600,716 | G→A | R80H (CGT→CAT) | bcp → | thiol peroxidase |
| RA | 2,602,942 | G→A | G375G (GGG→GGA) | hyfB → | hydrogenase 4 component B |
| RA | 2,603,828 | G→A | A671T (GCC→ACC) | hyfB → | hydrogenase 4 component B |
| RA | 2,609,438 | G→A | E318K (GAA→AAA) | hyfG → | hydrogenase 4 catalytic subunit HyfG |
| RA | 2,622,358 | G→A | G42D (GGC→GAC) | purN → | phosphoribosylglycinamide formyltransferase 1 |
| RA | 2,646,753 | G→A | S191S (TCC→TCT) | pbpC ← | peptidoglycan glycosyltransferase PbpC |
| RA | 2,654,454 | G→A | T160T (ACC→ACT) | sseB ← | protein SseB |
| RA | 2,678,218 | G→A | G48G (GGC→GGT) | yphE ← | putative ABC transporter ATP‑binding protein YphE |
| RA | 2,692,949 | G→A | G865G (GGC→GGT) | purL ← | phosphoribosylformylglycinamide synthetase |
| RA | 2,698,650 | G→A | intergenic (‑100/‑109) | pgpC ← / → yfhH | phosphatidylglycerophosphatase C/putative DNA‑binding transcriptional regulator YfhH |
| RA | 2,713,679 | C→T | H262Y (CAT→TAT) | srmB → | ATP‑dependent RNA helicase SrmB |
| RA | 2,718,545 | G→A | intergenic (‑17/‑190) | yfiF ← / → trxC | putative methyltransferase YfiF/reduced thioredoxin 2 |
| RA | 2,722,605 | G→A | E885K (GAA→AAA) | patZ → | peptidyl‑lysine N‑acetyltransferase |
| RA | 2,725,233 | C→T | G172R (GGA→AGA) | kgtP ← | alpha‑ketoglutarate:H(+) symporter |
| RA | 2,736,417 | C→T | A91V (GCC→GTC) | bamD → | outer membrane protein assembly factor BamD |
| RA | 2,746,932 | G→A | D288D (GAC→GAT) | ffh ← | signal recognition particle protein component |
| RA | 2,763,207 | G→A | L112F (CTC→TTC) | abpB ← | putative helicase YfjK |
| RA | 2,766,540 | G→A | R208H (CGC→CAC) | rnlA → | RNase LS, toxin of the RnlAB toxin‑antitoxin system |
| RA | 2,767,481 | G→A | intergenic (+126/‑229) | rnlB → / → yfjP | antitoxin RnlB/putative GTP‑binding protein YfjP |
| RA | 2,776,896 | G→A | R7H (CGC→CAC) | ypjJ → | DUF987 domain‑containing protein YpjJ |
| RA | 2,777,980 | Δ2 bp | intergenic (+198/+165) | ypjF → / ← ypjA | toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter YpjA |
| RA | 2,777,984 | Δ1 bp | intergenic (+202/+162) | ypjF → / ← ypjA | toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter YpjA |
| RA | 2,796,259 | G→A | A196T (GCG→ACG) | glaR → | DNA‑binding transcriptional repressor GlaR |
| RA | 2,867,430 | G→A | A41V (GCC→GTC) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,875,975 | G→A | L119L (CTG→TTG) | cysD ← | sulfate adenylyltransferase subunit 2 |
| RA | 2,880,433 | G→A | R206* (CGA→TGA) | casD ← | type I‑E CRISPR system Cascade subunit CasD |
| RA | 2,880,763 | G→A | R96C (CGT→TGT) | casD ← | type I‑E CRISPR system Cascade subunit CasD |
| RA | 2,881,160 | G→A | A328V (GCT→GTT) | casC ← | type I‑E CRISPR system Cascade subunit CasC |
| RA | 2,912,293 | G→A | Y453Y (TAC→TAT) | relA ← | GDP/GTP pyrophosphokinase |
| JC JC | 2,913,392 | IS2 (–) +5 bp | coding (256‑260/2235 nt) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 2,955,349 | C→T | A219T (GCT→ACT) | recB ← | exodeoxyribonuclease V subunit RecB |
| RA | 3,025,288 | C→T | A313V (GCT→GTT) | xanQ → | xanthine:H(+) symporter XanQ |
| RA | 3,025,590 | C→T | P414S (CCC→TCC) | xanQ → | xanthine:H(+) symporter XanQ |
| RA | 3,032,624 | C→T | L420L (CTG→TTG) | uacT → | urate:H(+) symporter |
| RA | 3,037,203 | C→T | V302I (GTC→ATC) | recJ ← | ssDNA‑specific exonuclease RecJ |
| RA | 3,037,599 | C→T | A170T (GCA→ACA) | recJ ← | ssDNA‑specific exonuclease RecJ |
| RA | 3,038,660 | C→T | G55S (GGC→AGC) | dsbC ← | protein disulfide isomerase DsbC |
| RA | 3,041,643 | C→T | P111S (CCA→TCA) | ygfZ → | folate‑binding protein |
| RA | 3,052,074 | C→T | E82K (GAA→AAA) | ubiI ← | 2‑octaprenylphenol 6‑hydroxylase |
| RA | 3,060,787 | C→T | intergenic (+141/‑63) | argP → / → scpA | DNA‑binding transcriptional dual regulator ArgP/methylmalonyl‑CoA mutase |
| RA | 3,061,674 | C→T | F275F (TTC→TTT) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,065,028 | C→T | A76V (GCC→GTC) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,081,667 | C→T | intergenic (‑32/‑246) | tktA ← / → loiP | transketolase 1/metalloprotease LoiP |
| RA | 3,085,118 | C→T | S265N (AGC→AAC) | speA ← | biosynthetic arginine decarboxylase |
| RA | 3,086,235 | G→A | F18F (TTC→TTT) E17K (GAA→AAA) |
yqgG ← yqgC → |
protein YqgG protein YqgC |
| RA | 3,088,010 | 2 bp→TT | intergenic (+150/‑273) | metK → / → galP | methionine adenosyltransferase/galactose:H(+) symporter |
| RA | 3,093,876 | C→T | A126V (GCG→GTG) | yqgF → | ribonuclease H‑like domain‑containing nuclease |
| RA | 3,095,445 | C→T | R116R (CGC→CGT) | yggS → | PLP homeostasis protein |
| RA | 3,101,599 | C→T | A9T (GCA→ACA) | yggN ← | DUF2884 domain‑containing protein YggN |
| RA | 3,110,975 | C→T | G51E (GGA→GAA) | yghD ← | putative type II secretion system M‑type protein YghD |
| RA | 3,148,391 | C→T | V165V (GTC→GTT) | gpr → | L‑glyceraldehyde 3‑phosphate reductase |
| RA | 3,209,309 | C→T | A429V (GCG→GTG) | ttdT → | L‑tartrate:succinate antiporter |
| RA | 3,236,745 | G→A | G69D (GGT→GAT) | ygjQ → | DUF218 domain‑containing protein YgjQ |
| RA | 3,241,019 | T→A | F359Y (TTC→TAC) | sstT → | serine/threonine:Na(+) symporter |
| RA | 3,246,535 | G→A | intergenic (+13/‑117) | exuT → / → exuR | hexuronate transporter/DNA‑binding transcriptional repressor ExuR |
| RA | 3,279,461 | A→G | H183R (CAT→CGT) | kbaZ → | putative tagatose‑1,6‑bisphosphate aldolase 1 chaperone |
| RA | 3,285,696 | C→T | F73F (TTC→TTT) | agaD → | galactosamine‑specific PTS enzyme IID component |
| RA | 3,336,411 | 2 bp→AT | coding (83‑84/1260 nt) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,403,159 | G→A | F58F (TTC→TTT) | csrD ← | regulator of CsrB and CsrC decay |
| RA | 3,413,728 | G→A | intergenic (‑263/‑136) | envR ← / → acrE | DNA‑binding transcriptional repressor EnvR/multidrug efflux pump membrane fusion lipoprotein AcrE |
| RA | 3,436,697 | G→A | E60E (GAG→GAA) | trkA → | NAD‑binding component of Trk potassium transporters |
| RA | 3,476,285 | G→A | H52H (CAC→CAT) | yheO ← | DNA‑binding transcriptional regulator YheO |
| RA | 3,513,409 | C→T | S77N (AGC→AAC) | trpS ← | tryptophan‑‑tRNA ligase |
| RA | 3,515,325 | G→A | H197Y (CAC→TAC) | dam ← | DNA adenine methyltransferase |
| RA | 3,518,683 | G→A | P128S (CCG→TCG) | aroK ← | shikimate kinase 1 |
| RA | 3,522,608 | C→T | R48R (CGG→CGA) | hofM ← | DNA utilization protein HofM |
| RA | 3,539,633 | G→A | G750D (GGT→GAT) | yhgF → | putative RNA‑binding protein YhgF |
| RA | 3,539,686 | G→A | A768T (GCA→ACA) | yhgF → | putative RNA‑binding protein YhgF |
| RA | 3,540,703 | G→A | E99E (GAG→GAA) | feoB → | Fe(2(+)) transporter FeoB |
| RA | 3,541,225 | G→A | A273A (GCG→GCA) | feoB → | Fe(2(+)) transporter FeoB |
| RA | 3,553,272 | C→T | S63L (TCG→TTG) | malT → | DNA‑binding transcriptional activator MalT |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,642,547 | G→A | P196S (CCG→TCG) | rsmJ ← | 16S rRNA m(2)G1516 methyltransferase |
| RA | 3,643,308 | G→A | F625F (TTC→TTT) | prlC ← | oligopeptidase A |
| RA | 3,650,642 | G→A | A136T (GCG→ACG) | arsC → | arsenate reductase |
| MC JC | 3,653,231 | Δ52,001 bp | IS5‑mediated | yhiS–[dppB] | 43 genes yhiS, slp, dctR, yhiD, hdeB, hdeA, hdeD, arrS, gadE, gadF, mdtE, mdtF, gadW, gadY, gadX, gadA, ccp, treF, yhjB, rcdB, yhjD, yhjE, yhjG, pdeH, kdgK, yhjJ, dctA, pdeK, bcsC, bcsZ, bcsB, bcsA, yhjR, bcsE, bcsF, bcsG, ldrD, rdlD, yhjV, dppF, dppD, dppC, [dppB] |
| RA | 3,705,623 | G→A | L56L (CTC→CTT) | dppB ← | dipeptide ABC transporter membrane subunit DppB |
| RA | 3,706,152 | G→A | G518G (GGC→GGT) | dppA ← | dipeptide ABC transporter periplasmic binding protein |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,708,813 | G→A | P555S (CCG→TCG) | eptB ← | phosphoethanolamine transferase EptB |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,771,979 | G→T | intergenic (‑235/‑302) | yibI ← / → mtlA | DUF3302 domain‑containing protein YibI/mannitol‑specific PTS enzyme IICBA component |
| RA | 3,775,395 | G→A | L324L (CTG→CTA) | mtlD → | mannitol‑1‑phosphate 5‑dehydrogenase |
| RA | 3,805,480 | C→T | G157G (GGG→GGA) | waaP ← | lipopolysaccharide core heptose (I) kinase |
| RA | 3,805,830 | C→T | E41K (GAA→AAA) | waaP ← | lipopolysaccharide core heptose (I) kinase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| JC | 3,822,651 | (CAGGAT)1→2 | coding (252/2109 nt) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,823,162 | C→T | H255Y (CAC→TAC) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,823,583 | G→A | G395E (GGG→GAG) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,824,443 | G→A | A682T (GCG→ACG) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,842,448 | C→T | intergenic (‑46/+7) | yicN ← / ← adeQ | DUF1198 domain‑containing protein YicN/adenine transporter |
| RA | 3,854,927 | G→A | G336S (GGC→AGC) | emrD → | multidrug efflux pump EmrD |
| RA | 3,869,637 | C→A | L87L (CTC→CTA) | cbrA → | colicin M resistance protein |
| RA | 3,878,536 | G→A | Y528Y (TAC→TAT) | gyrB ← | DNA gyrase subunit B |
| RA | 3,898,467 | C→T | A149V (GCC→GTC) | cbrC → | PF03691 family colicin E2 tolerance protein CbrC |
| RA | 3,915,155 | C→T | G16S (GGC→AGC) | glmU ← | fused N‑acetylglucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyltransferase |
| RA | 3,917,231 | C→T | G49S (GGC→AGC) | atpD ← | ATP synthase F1 complex subunit beta |
| RA | 3,918,209 | C→T | K19K (AAG→AAA) | atpG ← | ATP synthase F1 complex subunit gamma |
| RA | 3,919,941 | C→T | A155T (GCG→ACG) | atpH ← | ATP synthase F1 complex subunit delta |
| RA | 3,938,295 | +T | coding (69/993 nt) | rbsR → | DNA‑binding transcriptional dual regulator RbsR |
| RA | 3,951,988 | C→T | intergenic (+1431/‑213) | ilvX → / → ilvM | uncharacterized protein IlvX/acetolactate synthase II subunit IlvM |
| RA | 3,958,806 | C→T | N279N (AAC→AAT) | ilvC → | ketol‑acid reductoisomerase (NADP(+)) |
| RA | 3,963,552 | C→T | G226G (GGG→GGA) | gpp ← | guanosine‑5'‑triphosphate,3'‑diphosphate phosphatase |
| RA | 3,965,392 | C→T | R80H (CGC→CAC) | rhlB ← | ATP‑dependent RNA helicase RhlB |
| RA | 3,970,539 | C→T | T136I (ACA→ATA) | wecB → | UDP‑N‑acetylglucosamine 2‑epimerase |
| RA | 3,976,185 | G→A | S347N (AGC→AAC) | wecE → | dTDP‑4‑dehydro‑6‑deoxy‑D‑glucose transaminase |
| RA | 3,979,089 | C→T | Y163Y (TAC→TAT) | wzyE → | enterobacterial common antigen polymerase |
| RA | 3,983,365 | C→T | I136I (ATC→ATT) | aslB → | putative anaerobic sulfatase maturation enzyme AslB |
| RA | 3,985,771 | C→T | E79E (GAG→GAA) | aslA ← | putative sulfatase AslA |
| RA | 3,986,329 | C→T | intergenic (‑322/‑103) | aslA ← / → glmZ | putative sulfatase AslA/small regulatory RNA GlmZ |
| RA | 3,993,568 | C→T | P806S (CCG→TCG) | cyaA → | adenylate cyclase |
| RA | 3,996,049 | T→A | L156* (TTG→TAG) | yigA → | DUF484 domain‑containing protein YigA |
| RA | 4,011,802 | C→T | P243S (CCG→TCG) | bioP → | biotin transporter |
| RA | 4,015,369 | C→T | G267G (GGG→GGA) | ysgA ← | putative dienelactone hydrolase |
| RA | 4,015,879 | A→G | D97D (GAT→GAC) | ysgA ← | putative dienelactone hydrolase |
| RA | 4,046,937 | C→T | intergenic (‑335/‑29) | yihG ← / → polA | 1‑acylglycerol‑3‑phosphate O‑acyltransferase YihG/DNA polymerase I |
| RA | 4,084,903 | T→G | N307T (AAC→ACC) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,092,703 | A→G | F41L (TTC→CTC) | frvA ← | putative PTS enzyme IIA component FrvA |
| RA | 4,113,851 | G→A | H208Y (CAT→TAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| RA | 4,114,090 | C→T | G128D (GGT→GAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| RA | 4,118,719 | G→A | E69K (GAA→AAA) | zapB → | cell division factor ZapB |
| RA | 4,124,168 | C→A | G97* (GGA→TGA) | cytR ← | DNA‑binding transcriptional repressor CytR |
| RA | 4,135,729 | C→T | T632I (ACT→ATT) | katG → | catalase/hydroperoxidase HPI |
| RA | 4,137,967 | G→A | Q357* (CAG→TAG) | gldA ← | L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase |
| RA | 4,143,377 | C→T | S283L (TCA→TTA) | frwC → | putative PTS enzyme IIC component FrwC |
| RA | 4,159,493 | C→T | G433D (GGC→GAC) | sthA ← | soluble pyridine nucleotide transhydrogenase |
| RA | 4,161,248 | G→T | G61V (GGC→GTC) | fabR → | DNA‑binding transcriptional repressor FabR |
| RA | 4,164,123 | C→G | A162G (GCA→GGA) | btuB → | cobalamin outer membrane transporter |
| RA | 4,215,347 | T→A | intergenic (+138/‑131) | metA → / → aceB | homoserine O‑succinyltransferase/malate synthase A |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,282,332 | (A)5→6 | coding (744/1293 nt) | yjcF ← | pentapeptide repeat‑containing protein YjcF |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,341,309 | G→A | P107L (CCG→CTG) | melR ← | DNA‑binding transcriptional dual regulator MelR |
| RA | 4,392,997 | G→A | V357V (GTC→GTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,393,552 | G→A | F172F (TTC→TTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,394,231 | G→A | A56T (GCG→ACG) | nnr → | NAD(P)HX epimerase/NAD(P)HX dehydratase |
| RA | 4,396,373 | C→T | T103T (ACC→ACT) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,396,772 | T→C | F236F (TTT→TTC) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,399,673 | G→A | G141D (GGT→GAT) | miaA → | tRNA dimethylallyltransferase |
| RA | 4,425,688 | C→A | H57N (CAC→AAC) | priB → | primosomal replication protein N |
| RA | 4,425,696 | C→A | N59K (AAC→AAA) | priB → | primosomal replication protein N |
| RA | 4,447,298 | G→A | G1063S (GGT→AGT) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| RA | 4,532,409 | T→G | intergenic (‑758/+28) | sgcX ← / ← yjhP | putative endoglucanase with Zn‑dependent exopeptidase domain/putative methyltransferase YjhP |
| RA | 4,546,601 | C→T | I502I (ATC→ATT) | fimD → | type I fimbriae usher protein |
| RA | 4,612,957 | G→A | D183N (GAT→AAT) | yjjU → | putative patatin‑like phospholipase YjjU |
| RA | 4,613,247 | G→A | R279R (CGG→CGA) | yjjU → | putative patatin‑like phospholipase YjjU |
| RA | 4,613,740 | G→A | R87K (AGG→AAG) | yjjV → | putative metal‑dependent hydrolase YjjV |
| RA | 4,621,998 | C→T | A77V (GCC→GTC) | yjjJ → | toxin YjjJ |
| RA | 4,629,431 | G→A | T364T (ACC→ACT) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,636,217 | G→A | A71T (GCG→ACG) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,636,925 | G→C | R77P (CGC→CCC) | creC → | sensory histidine kinase CreC |
| RA | 4,637,791 | G→A | A366T (GCG→ACG) | creC → | sensory histidine kinase CreC |
| RA | 4,638,240 | G→A | L21L (TTG→TTA) | creD → | putative inner membrane protein CreD |
| JC JC | 4,640,418 | IS30 (–) +2 bp | coding (17‑18/141 nt) | yjjY → | uncharacterized protein YjjY |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 164552 | 164609 | 58 | 4 [3] | [3] 4 | hrpB/mrcB | RNA‑dependent NTPase HrpB/peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB |
| * | * | ÷ | NC_000913 | 1196333 | 1211436 | 15104 | 4 [3] | [3] 4 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1978495 | 1979270–1978504 | 10–776 | 31 [0] | [0] 13 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 2726218–2729227 | 2730810–2729571 | 345–4593 | 4 [3] | [3] 4 | rrlG–[rrsG] | rrlG,gltW,[rrsG] |
| * | * | ÷ | NC_000913 | 3423878–3424451 | 3424451 | 1–574 | 4 [3] | [3] 5 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 3708467 | 3708550 | 84 | 4 [0] | [3] 4 | dppA/proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| * | * | ÷ | NC_000913 | 4287449 | 4312942 | 25494 | 23 [0] | [0] 24 | ytcB–[alsR] | ytcB,nrfA,nrfB,nrfC,nrfD,nrfE,nrfF,nrfG,gltP,yjcO,fdhF,mdtP,mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,[alsR] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 1 (0.060) | 28 (1.590) | 23/254 | 0.0 | 96.5% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | = 1300693 | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1299499 = | NA (NA) | 14 (0.790) | 12/254 | 0.2 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 1300694 = | 0 (0.000) | intergenic (+147/‑488) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 31 (1.600) | 24/278 | 0.0 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 13 (0.670) | 9/278 | 0.6 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 24 (1.240) | 21/278 | 0.0 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 4287448 | 0 (0.000) | intergenic (‑77/‑163) | acs/ytcB | acetyl‑CoA synthetase (AMP‑forming)/protein YtcB | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 23 (1.190) | 19/278 | 0.0 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 4312943 = | 0 (0.000) | coding (49/891 nt) | alsR | DNA‑binding transcriptional repressor AlsR | |||||