| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 177,404 | A→T | L74Q (CTG→CAG) | yadS ← | PF03458 family protein YadS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 177,404 | 0 | A | T | 90.0% | 18.8 / NA | 10 | L74Q (CTG→CAG) | yadS | PF03458 family protein YadS |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (3/6); minor base G (0/1); total (3/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 | |||||||||||
ATACAAACCGCGATTAACGGACCGGCTTCCGCATTAAAGGCTTTATTCACGCCAATGCCGACAAACACCGCCAGACCAACGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGGGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATACCGCTGTGCCGACTATATCCAGCCAATAGACGAGCATTGT > NC_000913/177260‑177627 | aTACAAACCGCGATTAACGGACCGGCTTCCGCATTAAAGGCTTTATTCACGCCAATGCCGACAAACACCGCCAGACCAACGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCTCCAGCACGATGGTCGGCATGCTGGTGACCATGGCAACGACCAGATCGGTGGGATGTTTCACCCAAAATACCGGGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCgn < 1:63385/250‑2 (MQ=255) cACGCCAATGCCGACAAACACCGCCAGACCAACGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCTGCAt > 1:139660/1‑102 (MQ=255) ccGCCAATCCCAAAAAACACCGCCAGTCCAACGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTGGGCTGGCGCACCAGCACGATGGTCTGCATGCTGGTGACCATTGCAACGACCATATCGGTGGGAGCTTTCACCCAAAATACCGGTCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTcn < 1:91148/250‑2 (MQ=255) aCGCCAATGCCGACAAACACCGCCAGACCAACGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCGTGGCTGGCGCACCAGCACGATGGTCTGCATGCTGGTGACCATTGCAACGACCAGAGCGGTGGGATCTTTCAccc < 1:170374/145‑1 (MQ=255) ccAATGCCGACACACACCGCCAGACCAACGGCGGCAAGCACCGTCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCCCCAGCACGATGGTCTGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCGTTCACCCAAAATACCGTGCCGTGAGCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTGACCACGACCAGTCCCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGc < 1:87739/251‑1 (MQ=255) ccGACAAACACCGCCAGACCAACGGCGTACAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCTGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGGGCCGGGAt > 1:428574/1‑154 (MQ=255) gCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCTGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCGCCCAAAATACCGGGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGt < 1:240371/183‑1 (MQ=255) ccAGCCCCTGCAACACTCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGGCTGCATGCTGTTGACCATTGCAACGACCAGATCGGTGAGATCGTTCACCCAAAAGACCGGGCCGTGATCCAGCGCCAGGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGTGTCCATACGCAATTGTCCGGCTAACAAAACGCCGGAGATGGCAAATACCGCtgtg < 1:82555/251‑1 (MQ=255) tCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCTGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGGGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCgg < 1:82726/150‑1 (MQ=255) cTTGGCTGGCGCACCAGCACGATGGTCTGCATGCTGGTGACCATTGCAACGACAAGATCGGTGGGATCTTTCACCCAAAATACCGGGCCGTGATCAAGCGCCATGTCGAGAATTGTACCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATACCGCTGTGCCGACTATATCCAGCCAATAGACGAGCATTGt > 1:284366/1‑251 (MQ=255) | ATACAAACCGCGATTAACGGACCGGCTTCCGCATTAAAGGCTTTATTCACGCCAATGCCGACAAACACCGCCAGACCAACGGCGTCCAGCACCGGCAACATCCATTTTGGTAAGCGTCTTGGCTGGCGCACCAGCACGATGGTCAGCATGCTGGTGACCATTGCAACGACCAGATCGGTGGGATCTTTCACCCAAAATACCGGGCCGTGATCCAGCGCCATGTCGCGAATTGTCCCGCCGCCTACTGCGGTTACCACGCCCAGTACCAGAACACCAAAAGGGTCCATACGCAATTTTCCGGCTAACAAAACGCCGGAGATGGCAAATACCGCTGTGCCGACTATATCCAGCCAATAGACGAGCATTGT > NC_000913/177260‑177627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |