| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 51,290 | C→T | G106D (GGC→GAC) | apaG ← | DUF525 domain‑containing protein ApaG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 51,290 | 0 | C | T | 93.3% | 38.8 / NA | 15 | G106D (GGC→GAC) | apaG | DUF525 domain‑containing protein ApaG |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (4/10); minor base G (0/1); total (4/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAACATCCAGCGAACCCGGCCCGCGCGCGACCAGATCGCCCGTCAGCCAGAGGGTATCTTTCCCAGGGGTAAATTCTACTTTATGCAGCAATGCGATCAGTTCATCGTAACAACCATGAACGTCGCCAATAAGGTATGTCGCCATATTCTTTTAATGAATGAGTGTGGGAACGGCGAGTCGGAATACGGGAATGTCGATGCTGAAAGGGACGCCATTTTCATCGATCATTTCGTAGTGACCCTGCATGGTGCCCAGCGGGGTTTCAATGATTGCACCGCTGGTGTACTGGTACTCTTCGCCAGGCGCGATAAGTGGCTGGACGCCAACCACTCCTTCGCCCTGGACTTCGGTTTCACGGCCATTGCCATTGGTGATCAGCCAGTAACGCCCCAACAACTGCACTGGC > NC_000913/51078‑51484 | naaCATCCAGCGAACCCGGCCCGCGCGCGACCAGATCGCCCGTCAGCCAGAGGGTATCTTTCCCAGGGGTAAATTCTACTTTATGCAGCAATGCGATCAGTTCATCGTAACAACCATGAACGTCGCCAATAAGGTATGTCGCCATATTCTTTTAATGAATGAGTGTGGGAACGGCGAGTCGGAATACGGGAATGTCGATGCTGAAAGGGACGTAATTTTCATCGATCATTTCGTAGTGACCCTGCATGGTg > 1:319330/2‑251 (MQ=255) nnnnanccnNGATCNCCCGTCAGCCAGAGGGTATCTTTCNCAGGGGTAAATTCTACTTTATGCAGCAATGCNANCAGTTCAGCGTAACAACCATGAACGTCGCCAATAAGGTATGTCGCCATNTTCTTTTAATNAATNNGTGTNGNANCTGCGAGTCGGAATACGGGAATGTCGATGNTGAAAGGGACGTCATTTTCATCGNNCANNNCGNNGTGAc < 2:369230/210‑1 (MQ=255) cgACCAGATCGCCCGTCAGCCAGAGGGTATCTTTCCCAGGTGTAAATTCTACTTTATGCAGCAATGCGATCAGTGCATCGTAACAACCATGAACGTCGCCAATAAGGTATGTCGCCATATTCTTTTAATGAATGAGTGTGGGAACGGCGAGTCGGAATACGGGAATGTCTATGCTGAAAGGGACTGCATTTTCATCTGTCAGTTCGTAGTGACCCTGCATGGTGCCCAGCGGGGTTTCAATGATTGCACCg < 1:472270/251‑1 (MQ=255) cAGATCGCCCGTCAGCCAGAGGGTATCTTTCCCAGGGGCAAATTCTACTTTATGCAGCAATGCGATCAGTTCATCGTCAAAACCATGAAAGTCGCCAATAAGGTATGTCGCCATATTCTTTTATTGAATGAGTGTGGGAACGGCGAGTCGGAATACGGGAATGTCGATGCTGAAAGGGACGTCATTTTCATCGATCATTTCGTAGTGAc > 1:369230/1‑209 (MQ=255) cAGATCGCCCGTCAGCCAGAGGGTATCTGTCCCAGGGGTAAATTCTACTTTATGCAGCAATGCGATCAGTTCATCGTAACAACCATGAACGTCGCCAATAAGGTATGTCGCCATATTCTTTTAATGAATGAGTGTGGGAACGGCGAGTCGGAATACGGTAATGTCGATGCTGAATGTGACGTCATTTTCATCGATCATTTCGTAGTGACCCTGCATGGTGCCCAGCGGGGTTTCAATGAt < 1:274673/240‑1 (MQ=255) ccAGAGGGTATCTTTCCCAGGGGTAAATTCTACTTTATGCAGCAATGCGATCAGTTCATCGTAACAACCATGAACGTCGCCAATAAGGTATGTCGCCATAGTCTTTTAATGAATGAGTGTGGGAACGGCGAGTCGGAATACGGGAATGTCGATGCTGAAAGGGACGTCATTTTCATCGATCATTTCGTAGTGACCCTGCATGGTGCCCAGCGGGGTTTCAATGATTGCACCGCTGGTGTACTGGTACTCtt < 1:442761/251‑1 (MQ=255) gagGGTATCTTTCCCAGGGGTAAATTCTACTTTATGCAGCAATGCGATCAGTTCATCGTAACAACCATGAACGTCGCCAATAAGGTATGTCGCCATATTCTTTTAATGAATGAGTGTGGGAACGGCGAGTCGGAATACGGGAATGTCGATGCTGAAAGGGACGTCATTTTCATCGATCATTTCGTAGTGACCCTGCATGGTGCCCAGCGGGGTTTCAATGATTGCACCGCTGGTGTACTGGTACTCTTCGc < 1:161301/251‑1 (MQ=255) tCTACTTTATGCAGCAATGCGATCAGTTCATCGTAACAACCATGAACGTCGCCAATAAGGTATGTCGCCATATTCTTTTAATGAATGAGTGTGGGAACGGCGAGTCGGAATACGGGAATGTCGATGCTGAAAGGGACGTCATTTTCATCGATCATTTCGTAGTGACCCTGCATGGTGCCCAGCGGGGTTTCAATGATTGCACCGCTGGTGTACTGGTACTCGTCGCCAGGCGCGATAAGTGGCTGGACGc < 1:155101/250‑1 (MQ=255) aGTTCATCGTAACAACCATGAACGTCGCCAATAAGGTATGTCGCCATATTCTTTTAATGAATGAGTGTGGGAACGGCGAGTCGGAATACGGGAATGTCGATTCTGAAAGGGACGTCATTTTCAGCGATCATTTCGTAGTGACCCTGCATGGTGCCCAGCGGGGTTTCAAGGATTGCACCGCTGGTGTACTGGTACTCTTCGCCAGGCGCGATAAGTGGCTGGACGCCAACCACTCCTTCGCCCTGGACTTc < 1:341862/251‑1 (MQ=255) aGTTCATCGTAACAACCATGAACGTCGCCAATAAGGTATGTCGCCATATTCTTTTAATGAATGAGTGTGGGAACGGCGAGTCGGAATACGGGAATGTCGATGCTGAAAGGGACGTCATTTTCATCGATCATTTCGTAGTGACCCTGCATGGTGCCCAGCGGGGTTTCAATGATTGCACCGCTGGTGTACTGGTACTCTTCGCCAGGCGCGATAAGTGGCTGGACGCCAACCACTCCTTCGCCCTGGACTTc < 1:366095/251‑1 (MQ=255) nnnnnnnnnnccNNNNNCGTNGCCAATAAGGTATGTCGCCATATTCTTTTAATGAATGAGTGTGGGAACGGCGAGTCGGAATACGGGAATGTCGATGCTGAAAGGGACGTCATTTTCATCGATCATTTCGTAGTGACCCTGCATGGTGCCCAGc < 2:319330/144‑1 (MQ=255) aaGGTATGTCGCCATATTCTGTTAATGAATGAGTGTGGGAACGGCGAGTCGGAATACGGGAATGTCGATGCTGAAAGGGACGTCATTTTCATCGATCATTTCGTAGTGACCCTGCATGGTGCCCAGCGGGGTTTCAATGATTGCACCGCTGGTGTACTGGTACTCTTCGCCAGGCGCGATAAGTGGCTGGACGCCAACCACTCCTTCGCCCTGGACTTCGGTTTCACGGCCATTGCCATTGGTGATCAgn < 1:317007/250‑2 (MQ=255) cNAGTCGGAATCAGGGAATGTCGATGCTGAAAGGGACGTCATTTTCATCGATCATTTCGTAGTGACCCTGCATGGTGCCCAGCGGGGTTTCAATGATTGCACCGCTGGTGTACTGGTACTCTTCGCCAGGCGCGATAAGTGGCTGGACGCCAACCACTCCTTCGCCCTGGAc > 1:394961/1‑172 (MQ=255) cGAGTCGGAATACGGGAATGTCGATGCTGAAAGGGACGTCATTTTCATCGATCATTTCGTAGTGACCCTGCATGGTGCCCAGCGGGGTTTCAATGATTGCACCGCTGGTGTACTGGTACTCTTCGCCAGGCGCGATAAGTGGCTGGACGCCAACCACTCCTTcn < 1:122992/164‑2 (MQ=255) gAAAGGGACGTCATTTTCATCGATCATTTCGTAGTGACACTGCATGGTGCACAGCGTGGTTTCAATGCTTGCACCGCTGGTGTACTGGTACTCTTCGCACGGCGCGATAAGTGGCTGGACGCCAACCACTCCTTCGCCCTGGACTTCGGTTTCACGGCCCTTGCCATTGGTGATCAGCCAGTAACGCCCCAACAACTGCCCTGgc > 1:367940/1‑205 (MQ=255) | GAACATCCAGCGAACCCGGCCCGCGCGCGACCAGATCGCCCGTCAGCCAGAGGGTATCTTTCCCAGGGGTAAATTCTACTTTATGCAGCAATGCGATCAGTTCATCGTAACAACCATGAACGTCGCCAATAAGGTATGTCGCCATATTCTTTTAATGAATGAGTGTGGGAACGGCGAGTCGGAATACGGGAATGTCGATGCTGAAAGGGACGCCATTTTCATCGATCATTTCGTAGTGACCCTGCATGGTGCCCAGCGGGGTTTCAATGATTGCACCGCTGGTGTACTGGTACTCTTCGCCAGGCGCGATAAGTGGCTGGACGCCAACCACTCCTTCGCCCTGGACTTCGGTTTCACGGCCATTGCCATTGGTGATCAGCCAGTAACGCCCCAACAACTGCACTGGC > NC_000913/51078‑51484 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |