| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,046,937 | C→T | intergenic (‑335/‑29) | yihG ← / → polA | 1‑acylglycerol‑3‑phosphate O‑acyltransferase YihG/DNA polymerase I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,046,937 | 0 | C | T | 92.3% | 30.8 / NA | 13 | intergenic (‑335/‑29) | yihG/polA | 1‑acylglycerol‑3‑phosphate O‑acyltransferase YihG/DNA polymerase I |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (8/4); minor base G (0/1); total (8/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.50e-01 | |||||||||||
GGGATGGATTTATTTTTAACTGCATGAAAAACAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATTTATGCACAAAGTTATCCACATGACGATTTGCGAGCGATCCAGAAGATCTACAAAAGATTTTCACGAAAAGCGGTGAAAAACTCATGTTTTCATCCTGTCTGTGGCATCCTTTACCCATAATCTGATAAACAGGCACGGACATTATGGTTCAGATCCCCCAAAATCCACTTATCCTTGTAGATGGTTCATCTTATCTTTATCGCGCATATCACGCGTTTCCCCCGCTGACTAACAGCGCAGGCGAGCCGACCGGTGCGATGTATGGTGTCCTCAACATGCTGCGCAGTCTGATCATGCAATATAAACCGACGCATGCAGCGGTG > NC_000913/4046732‑4047145 | gggATGGATTTATTTTTAACTGCATGAAAAACAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATTTATGCACAAAGTTATCCACATGACGATTTGCGAGCGATCCAGAAGATCTACAAAAGATTTTCACGAAAAGCGGTGAAAAACTCATGTTTTCATCCTGTCTGTGGCATCCTTTACTCATAATCTGATAAAc > 1:322551/1‑221 (MQ=255) cAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATTTATGCACAAAGTTATCCACAGGACGATTGGCGAGCGATCCAGAAGATCTACAAAAGATTTTCACGAAAAGCGGGGAAAAACGCATGTTGTCATCCTGTCTGTGGGATCCTGTACGCATAATCTGATTAACAGGCGCGTACATTATGGTTCAGATCCCCCAAAATCCACTTATCCTTGTAGATGGTTCatct < 1:252472/251‑1 (MQ=255) naaaCATCATGCTGTAAAAAGCATGATAATACATTAAAAGCGCTGTAAATAATTTATGCACAAAGTTATCCACATGACGATTTGCGAGCGATACAGAAGATATACAACAGATTTTCACGAAAAGCGGTGAAAAACTCATGTTTTCATCATGTCTGTGGCATCCTTTACTCATAATCTGATAAACAGGCACGGACATTATGGTTAAGATCCCCCAAAATCCACTTATCCTTGTAGATGGTTCatcttatctt > 1:60347/2‑251 (MQ=255) aataaATTAAAAGCGATGTAAATAATTTATGCACAAAGTTATCCACATGACGATTTGCGAGCGATCCAGAAGATCTACAAAAGATTTTCACGAAAAGCGGTGAAAAACTCATGTTTTCATCCTGTCTGTGGCATCCTTTACTCATAATCTGATAAACAGGCACGGACATTATGGTTCAGATCCCCCAAAATCCACTTATCCTTGTAGATGGTTCATCTTATCTTTATCGCGCATATCACGCGTTTccccn < 1:61937/250‑2 (MQ=255) aaaTTAAAAGCGATGTAAATAATTTATGCACAAAGTTATCCACATGACGATTTGCGAGCGATCCAGAAGATCTACAAAAGATTTTCACGAAAAGCGGTGAAAAACTCATGTTTTCATCCTGTCTGTGGCATCCTTTACTCATAATCTGATAAACAGGCACGGACATTATGGTTCAGATCCCCCAAAATCCACTTATCCTTGTAGATGGTTCATCTTATCTTTATCgcgc < 1:384814/229‑1 (MQ=255) ccAGNNGATCTACAAAAGATTTTCACGAAAAGCGGTGAAAAACTCATGTTTTCATCCTGTCTGTGGCATCCTTTACTCATAATCTGATAAACAg < 2:21471/94‑1 (MQ=255) ccAGAAGATCTACAAAAGATTTTCACGAAAAGCGGTGAAAAACTCATGTTTTCATCCTGTCTGTGGCATCCTTTACTCATAATCTGATAAACAg > 1:21471/1‑94 (MQ=255) gATTTTCACGAAAAGCGGTGAAAAACTCATGTTTTCATCATGTCTGTGGCATCCTTTACTCATAATCTGATAAACAGGCACGGACATTATGGCTCAGATACCCCaaaa > 1:282162/1‑108 (MQ=255) tCACGAAAAGCGGTGAAAAACTCATGTTTTCATCCTGTCTGTGGCATCCTTTACTCATAATCTGATAAACAGGCACGGACATTAGGGGTCAGAGCCCCCAAAATCCACTTAGCCTTGTAGATGGTTCATCTGATCTTTATCGCGCATATCACGCGTTTCCCCCGCTGAc < 1:295443/169‑1 (MQ=255) cGAAAAGCGGTGAAAAACTCATGTTTTCATCCTGTCTGTGGCATCCTTTACTCATACTCTGATAAACAGGCACGGACATTCTGGTTCAGATCCCCCAAAATCCACTTATCCTTGTAGATGGTTCATCTTATCTTTATCGCGCATATCACGCGTTTCCCCCGCTGACTAACAGCGCAGGCGAGCCGACCGGTGCGATGTATGGTGTCCTCAACATGCTGCGCAGTCTGATCATGCAATATAAACCGACGCAt > 1:173712/1‑251 (MQ=255) ggTGAAAAACTCATGTTTTCATCCTGTCTGTGGCATCCTTTACTCATAATCTGCTACACAGGCACGGACCTTATGGTTCAGCTCACCCACAATCCACTTATCCTTGTAGATgg > 1:236988/1‑113 (MQ=255) gTGAAAAACTCATGTTTTCATCCTGTCTGTGGCATCCTTTACTCATAATCTGATAAACAGGCACGGACATTATGGTTCAGATCCCCCAAAATCCACTTATCCTTGTAGATGGTTCATCTTATCTTTATCGCGCATATCACGCGTTTCCCCCGCTGACTa > 1:475802/1‑159 (MQ=255) gTGAAAAACTCATGTTTTCATCCTGTCTGTGGCATCCTTTACTCATAATCTGATAAACAGGCACGGACATTATGGTTCAGATCCCCCAAAATCCACTTATCCTTGTAGATGGTTCATCTTATCTTTATCGCGCATATCACGCGTTTCCCCCGCTGACTAACAGCGCAGGCGAGCCGACCGGTGCGATGTATGGTGTCCTCAACATGCTGCGCAGTCTGATCATGCAATATAAACCGACGCATGCAGCggtg > 1:26870/1‑251 (MQ=255) | GGGATGGATTTATTTTTAACTGCATGAAAAACAAAGACAAACATCATGCTGTAAAAAGCATGATAATAAATTAAAAGCGATGTAAATAATTTATGCACAAAGTTATCCACATGACGATTTGCGAGCGATCCAGAAGATCTACAAAAGATTTTCACGAAAAGCGGTGAAAAACTCATGTTTTCATCCTGTCTGTGGCATCCTTTACCCATAATCTGATAAACAGGCACGGACATTATGGTTCAGATCCCCCAAAATCCACTTATCCTTGTAGATGGTTCATCTTATCTTTATCGCGCATATCACGCGTTTCCCCCGCTGACTAACAGCGCAGGCGAGCCGACCGGTGCGATGTATGGTGTCCTCAACATGCTGCGCAGTCTGATCATGCAATATAAACCGACGCATGCAGCGGTG > NC_000913/4046732‑4047145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |