New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	1 (0.060)	28 (1.590)	23/254	0.0	96.5%	intergenic (+253/‑69)	ychE/insH21	MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator
	?	NC_000913	= 1300693	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region

CGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGG  >  NC_000913/1299278‑1299718                                                                                                                                                                                                                             |                                                                                                                                                                                                                             ngtTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttc                                                                                                                                                                                                >  1:304658‑M1/2‑221 (MQ=255)                                ccGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                                                                                                                                                                 >  1:195228‑M1/1‑190 (MQ=255)                                    gcAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTGCCTTAACTGCTTCTCCTCACCATCATGTTAGTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAATTGCTAAggaaggtgcgaataggcggggaaatccctctcggctgactcagtcatttcattgcttcatgtttg                                                                                                                                                             <  1:207343‑M1/251‑66 (MQ=255)                                          aTCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCATCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccg                                                                                                                                                        >  1:462930‑M1/1‑180 (MQ=255)                                                  nannannaATNGGTAAAAATATTCTTCTCAAANNACAGTTAGTNATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCNTAATCCTGGNNTTNCTGAANANNNANNNAANTGATATTATTAATTCCACTNCCNNTGGTAGNGGAAAGTGCTAAggaaggtgcgaata                                                                                                                                                                                                                <  2:116527‑M1/185‑15 (MQ=255)                                                  caaaagGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaata                                                                                                                                                                                                                >  1:116527‑M1/1‑172 (MQ=255)                                                      agGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTCACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgat                                                                                                                                                      >  1:258825‑M1/1‑168 (MQ=255)                                                               tAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATCTCCTTAACTGCTTATCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATCTTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcct                                                                                                                                  >  1:266577‑M1/1‑159 (MQ=255)                                                                                aaTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcattgcgtcaggtttgagccgattttttctcccgtaaatgccttgaatcagcctatttag                                                                                                                 <  1:447565‑M1/251‑110 (MQ=255)                                                                                     nagttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                                                                                                                                                                 >  1:98505‑M1/2‑137 (MQ=255)                                                                                               taAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcag                                                                                                                                                                                   <  1:235691‑M1/170‑44 (MQ=255)                                                                                               taAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATGTTCTCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACGGCCTTTGGTAGAGGAAATTGCTAAggaaggtgcgaataagcggggaaattcttctcgg                                                                                                                                                                                            <  1:482090‑M1/161‑35 (MQ=255)                                                                                                   gATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTaag                                                                                                                                                                                                                             <  1:15006/124‑1 (MQ=255)                                                                                                      ttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCTCTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcattcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaan                                                                                            <  1:93749‑M1/250‑131 (MQ=255)                                                                                                           tAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgag                                                                                                                                                           <  1:182228‑M1/182‑68 (MQ=255)                                                                                                                                 tGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccttaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccc                                                                                  <  1:434481‑M1/233‑141 (MQ=255)                                                                                                                                    tATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccn                                                                                  <  1:133098‑M1/230‑141 (MQ=255)                                                                                                                                            ccACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgac                                                     >  1:156151‑M1/1‑82 (MQ=255)                                                                                                                                                    tAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGATAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatcccccg                                                                               >  1:220130‑M1/1‑74 (MQ=255)                                                                                                                                                     aaTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAtgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagcc                                                                                                                                                         <  1:64833‑M1/142‑70 (MQ=255)                                                                                                                                                             gCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcc                                    >  1:446235‑M1/1‑65 (MQ=255)                                                                                                                                                                          taatTNAAATGNTNNTATTAATTCCCCCGCCTTTNGTAGAGGAAAGTGCTNAGGANGGCGCNa                                                                                                                                                                                                                   >  2:209996/1‑63 (MQ=255)                                                                                                                                                                           aatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggc                      <  1:160982‑M1/251‑201 (MQ=255)                                                                                                                                                                                               gactggtcaggtcaatgccccccaatGCTAAGGAAGGTGCGAACAAGACCCTGATATGAGATCATGTTTGTCATCTGTAGCCTTACGACAGGGTTCAGCATGAGTTATAAACTTATCGTCGGCGACAGTGAATACAGCAGTAATCGCCGTCAGATGAGAAAATAGATTTGCCTGTGCCCCAGTTATGAGGTGCTTGCATCGGAAAACATGGTGGAAGTCATCGAGCCGTTGTACCCCAAGGTTGGTAATgg  <  1:275268/226‑1 (MQ=2)                                                                                                                                                                                                      ncctTTGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataaca        >  1:302838‑M1/2‑24 (MQ=255)                                                                                                                                                                                                          ttGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcagctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcc                                    <  1:6242‑M1/206‑187 (MQ=255)                                                                                                                                                                                                           tGGTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcc                                                                                                                                   <  1:457534‑M1/110‑92 (MQ=255)                                                                                                                                                                                                             gTAGAGGAAAGTGCTAAggaagntncgaataagcggggaaattcttctcggctgactcagtcatttcatttctncatgtttgagncgannttttntncngtaaatgccttgaatcagcctatttagacngtttcttcgccatttaaggcgttnnccnnngtnnttagt                                                                       <  2:369858‑M1/168‑152 (MQ=255)                                                                                                                                                                                                             gTAGAGGAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgcctcagtcatttcctttcttaatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagt                                                                       >  1:369858‑M1/1‑17 (MQ=255)                                                                                                                                                                                                                  ggAAAGTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcg                                                                                                     >  1:3978‑M1/1‑12 (MQ=255)                                                                                                                                                                                                                  ggAAAGGGCTAAggaaggggcgaataagcgtggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttcgcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaagg                                                                                           <  1:341811‑M1/143‑132 (MQ=255)                                                                                                                                                                                                                             |                                                                                                                                                                                                                             CGTTTACTTCGTCATTATTTTTACTTTGTTCCCGCGCAGTTATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGG  >  NC_000913/1299278‑1299718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.