| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,767,481 | G→A | intergenic (+126/‑229) | rnlB → / → yfjP | antitoxin RnlB/putative GTP‑binding protein YfjP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,767,481 | 0 | G | A | 90.9% | 21.5 / ‑3.8 | 11 | intergenic (+126/‑229) | rnlB/yfjP | antitoxin RnlB/putative GTP‑binding protein YfjP |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (4/6); total (4/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.20e-01 | |||||||||||
CGTTCCGACACATATCCTGAGCAAACTGACTTTTACTTTACGTAATCATCCTGAGTACCTAGAAGCCTCTGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGCAATCTATGTGCATTGAAAAAATCTTCAGATAGATATCATTCTCCTGAACAATCCGATGAACGGCAGAACCTCGCGGTTCTGCCGTTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGT > NC_000913/2767238‑2767726 | cGTTCCGACACATAGCCTGAGCAAACTGACTTTTACTTTACGTAATCATCCTGAGTACCTAGAAGCCTCTGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGGCAAGGGATTTTTGAATCTCTTCTCGCTAAACGAACCAGTATAGAATTCGCGCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTATGCa < 1:286799/248‑1 (MQ=255) ccTGAGTACCTAGAAGCCTCTGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCAATAACCCCCCCTCACAACGTCCTGCATAGTGAACACGTTTGCCCCTGTGCTCCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAAttt < 1:32239/250‑1 (MQ=255) gTACCTAGAAGCCTCTGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACACGCACTCATAACCTCATGCATAGGGAAAATGTTTTCCCATATTCACCCACGACTAAATTTAACCACCTTTACACTTATCAATAATGCCACCAATTTTCTgg > 1:270198/1‑250 (MQ=255) ctAAACGAACCAGTATAGAATTCGCCCGTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCGCACAACGTCCTGCATAGGGAACACGTTTTCCCCTATGCACCCACGTCAAAATTTCCCCCCCGTTAAACGTCTCAATAATGTCACCAATGGTCGGGAAATCCTATGATGCCTTTCCCg < 1:409611/197‑1 (MQ=255) cacaACGTCCTGCATAGGGAACACGTTTTCCCCTATGCACCCACGACTATATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAAATTCTGCAATCTATGTGCATTGAAAAAATCTTCAGATAGATATCATTCTCCTGAACAATCCGATGAACGGCAGAACCTCGCGGTTCTGCCGTTTTTGTTTTACTTTTc < 1:256865/251‑1 (MQ=255) cacaACGTCCTGCATAGGGAACACGTTTTCCCCTATGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCGCCAATTTTCTGGAAAGCCTATGATGCCTTTCCCGGTGAATGGTGGTGTGAGGACAGAAAGATGCTGCAATCTATGTGCATGGAAAAAATCTTCAGATAGATACCATGCTCCTGAACAATCCGATGAACGGCAGAACCTcg < 1:415273/223‑1 (MQ=255) aGGGAACANGNNNTNNCCTATGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAANACTGTAACCAATTTTNTGNCAATNCTCNGATGc > 2:351696/1‑94 (MQ=255) aGGGAACACGGTTTCCCCTATGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGc < 1:351696/94‑1 (MQ=255) cGTTTTCCCCTATGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAAAAATGTCACCAATTTTCGGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGCAATCTATGTGCAGTGAAAAAATCTTCAGATAGATATCATTCTCCTGAACAATCCGATGAACGGCAGAACCTcgc < 1:490497/201‑1 (MQ=255) ccccTATGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGCAATCTATGTGCATTGAAAAAATCTTCAGATAGATATCATTCTCCTGAACAATCCGATGAACGGCAGAACCTCGCGGTTCTGCCGTTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGt > 1:177275/1‑251 (MQ=255) ccccTATGCACCCACGACTAAATTTCCCCCCCTTTAAACTTATCAATAATGTCCCCACTTATCTGCAAATCCTATGCTCCCTTTCCCGGCAACTGGCGCTGTAAGTTCAGAAAGATTCTGCAATCTATGTGCATTGACAAAATCTTCAGATAGATATCATTCTCATGAACAACCCGCTGAACGGCAGAACCTCGCGGGTCTGCCGATTTTg > 1:230069/1‑211 (MQ=255) | CGTTCCGACACATATCCTGAGCAAACTGACTTTTACTTTACGTAATCATCCTGAGTACCTAGAAGCCTCTGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAACCCCCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATGGTGCTGTGAGTTCAGAAAGATTCTGCAATCTATGTGCATTGAAAAAATCTTCAGATAGATATCATTCTCCTGAACAATCCGATGAACGGCAGAACCTCGCGGTTCTGCCGTTTTTGTTTTACTTTTCAGAGGAGTGGTGATGAAAAATTTTGAAGT > NC_000913/2767238‑2767726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |