| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,455 | 1 | . | G | 93.8% | 28.4 / ‑3.5 | 16 | intergenic (+589/+167) | rtcR/glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (7/8); total (8/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGC‑C‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTC > NC_000913/3560224‑3560698 | gtgtTAGCAACGTTGAGATTTTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTCCCGCTTCCGGCGTGGGGCCGATATCGATAAACAGCGTCGACCCATTGGGGATTTCCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCtn < 1:52101/251‑2 (MQ=255) cgcTACCGCTTCCGGCGTGGGGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACGTTGCGGGCGATGCGCTCTTTTTCTTCGGTCGGGGTGGCCTTGCGATCGTGCCACGGGGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGcc < 1:281190/193‑1 (MQ=255) cGGCGTGGGGCCGATATCGATAAAAAGCGTCGAGGCATTGGGGGTTTGCTCCGCCCCTTTGCGGGCGATGGGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGGGTTAACCGAACTGGAAAGAAGCGCCTCCCCGCCCTGATGGG‑GGAGGATAAGGGTTTGGTCCGCCCGCTCATTGAGGTCGCGGCGGATAGTCTGCGGGCTGGCGGAGaaagaacggaagagcccacctctgaact > 1:188226/1‑226 (MQ=255) tggtgCCGATATCGATAAACAGCGTCGAGCCATTGGGGAATTGCTCCGCCAACTAGCGGCCGCTACGAACCTTTTCTTCGGTCTGGGTGGCCTTGAGATAGTGCAAAAGCGAGTTACCCGAAATGGCAGGCACCCACGCACCGCCATGATGGCGC‑AGGATCAGGtt > 1:354214/1‑166 (MQ=255) aCAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCCTGCCACGCCGTGATAACCGAAATTGAAGGCAGCGCAGCACCGCCATGATCGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCCTTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATACTCTACCAGCGCTTCGGCACTGACATAACACTGCTGTTTAACCAGt > 1:349352/1‑251 (MQ=255) gCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGAGCGTTGCGCTCTTTTTCTTTGGTCTGGGTGGCCTTGAGATAGTGCCACGGCGTGTTAATCGAACTGGAAGGCAGCGCCGCACCGCCCTGATGGCGC‑AGGAt > 1:467881/1‑139 (MQ=255) tnnccGGTCNNGGAGGCCTTGCGATCGTGCCACGGCGTGTTAACCGACCTGAAAGGCTGCCCCGCACCGCCATGATGGCGC‑AGGATCAGATTTTGCTcc < 2:28996/95‑1 (MQ=255) cGATCGTGCCCCGGCGTTTTAACCTAACTGGAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTcgc < 1:172047/241‑1 (MQ=255) gTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCCTGGTGGCGC‑AGGATAAGGTTTTGCTCCCCCAGCTCCTTGCGGTCGCGGCGGATAGTCTGAGGGCTGACGGAGAAATGCTCTAACAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTTCTTTATAAATCCCTGGAATTTttttcgttt > 1:495835/1‑232 (MQ=255) gCCACNNCGNNNTTNNCGAACTGGAAGGCAGCGCCGCAANGCCATGATGGCGC‑AGGATCCGGTTTTGCTNCNCNAGCTNNTTGNGGTCgcggcg > 2:364603/1‑94 (MQ=255) gCCACGGCTTGTTAACCGAGGTGGAAGCCACCGCCGCACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCgcggcg < 1:364603/94‑1 (MQ=255) gAACTGGAAGGCCGCGCCGCACCGCCATGCTGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAAc > 1:323463/1‑251 (MQ=255) gAACTGGAAGGCAGCGCCCCTCCTCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATATTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCGTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTGGTGACGTTGTGGTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTGTCTCGCATTGAGCTAATCAACAAAAGCCATCGCTAAAc < 1:436014/251‑1 (MQ=255) ggAAGGCAGCGCCGCACCGCCATGATGGCGC‑AGTATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGGCGGAGAAATGCTGTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTaan < 1:48787/141‑2 (MQ=255) ncgcACCGCCATGATGGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGc > 1:129857/2‑251 (MQ=255) gatgGCGC‑AGGATCAGGTTTTGCTCCGCCAGCTCAGTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACGCGGCTATGTGTGCNc < 1:394307/250‑1 (MQ=255) | GTGTTAGCAACGTTGAGATTGTTGGTGACAATGCGCAAATTGCTGTGATTGAGCAGTGCGTGCGCTACCGCTTCCGGCGTGGTGCCGATATCGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGGC‑C‑AGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTATAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGCGATGTGTGCTC > NC_000913/3560224‑3560698 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |