| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,025,590 | C→T | P414S (CCC→TCC) | xanQ → | xanthine:H(+) symporter XanQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,025,590 | 0 | C | T | 92.9% | 36.4 / NA | 14 | P414S (CCC→TCC) | xanQ | xanthine:H(+) symporter XanQ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (9/4); minor base G (0/1); total (9/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCGTCGCTTCACGTTATGTCGGGCGAACCATCGCGGTAATGCTGGTTATCCTCGGCTTATTTCCGATGATTGGCGGCTTCTTCACGACCATTCCCTCGGCAGTTCTGGGAGGCGCAATGACGTTGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTTTAAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTAACTGCGATTTTATTAAATATTATCCTCCCTGGTGGCTACCGACAGGAAAACGTTCTGCCTGGTATTACCTCAGCGGAAGAGATGGATTAACAGTAAAGGAGTCAATGATGTCAGGAGAACACACGTTAAAAGCGGTACGAGGCAGTTTTATT > NC_000913/3025348‑3025813 | gCGTCGCTTCACGTTATGTCGGGCGAACCATCGCGGTCATGCTGGTTATTCTCGGCTTATTTCCGATGATTGGCGGCTTCTTCACGACCCTTCCCTCGGCCGTTCTGGGAGGCGCAATGACGTTGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTCAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTTGGTTTAGGGCTTGGCGTCTCCTACGATTCCGAAAtt > 1:196726/1‑251 (MQ=255) gCTTCACGTTATGACGGGCGAACCATCGCGGGAATGCTGGTTATCCTCGGCTTATTTCCGATGATTGGCGGCTTCTTCACGACCATTCCCTCGGCAGTTCTGGGAGGCGCAATGACGTTGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATTCCGAAATTTTTa > 1:386851/1‑250 (MQ=255) ccTCGGCTTATTTCCGATGATTGGCGGCTTCTTCACGCCCATTCCCTCGGCAGTTCTGGGAGGAGCAATGACGTTGATGTTTTCCATGATTGCCATAGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACCCTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATTCCGAAATTTTTAAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTAttt > 1:269563/1‑251 (MQ=255) cAGTTCTGGGAGGCGCAATGACGTTGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATTCCGAAATTTTTAAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTAACTGCGATTTTATTTAATATTATCCTCCCTGGTGGc > 1:385062/1‑251 (MQ=255) cTGGGAGGCGCCATGACGTTGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATTCCGAAATTTTTAAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTTACTGCGATTTTATTTAATATTTTCCTCCCTGGGGGCTaacc > 1:385526/1‑248 (MQ=255) cGTTGNNGTNNNCCNNGATTGCCATCGCAGGGATTCGCANCATCATCACCAACGGTTTAAAGCGCCGTGNANCNCTTANNGTCNCCACTTCTTTNGGTTTAGGGCTTGGCGTCTCCTACGATTCCGAAATTTTTAAAATATTGNCNGCCTCTATTTATGTATTAGTTGAAAAc > 2:373096/1‑173 (MQ=255) cGTTGATGTTTTCCATGATTGCCACCGCAGGGATTCGCATCATCATCACCAACTGTTTAAATCGCCGTGAAACTCTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTTGCGTCTCCTACGATGTCGAAATTTTTAAAATATTGCCAGCCTCTATGTAGGTATTAGTTGAAAAc < 1:373096/173‑1 (MQ=255) cGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATTCCGAAATTTTTAAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTAACTGCGATTTTATTAAATATTATCCTCCCTGGTGGCTACCGACAGGAAAACGTTCTGCCTGGTATTAcc < 1:14489/238‑1 (MQ=255) acacTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATTCCGAAATTTTTAAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTAAc < 1:27249/125‑1 (MQ=255) acacTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATTCCGAAATTTTTAAAATATTGCCAGCCTCTATTTATGNNTTAGTTNna > 2:27249/1‑99 (MQ=255) cGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATTCCGAAATTTTTAAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCGATTTGTGCTGGCGGGTTAACTGCGATTTTATTAAATATTATCCTCCCtggt < 1:271839/145‑1 (MQ=255) ctcCTNNNATNCCNANANTTTTAAAATATTGCCAGCCTCTATTTATg > 2:104848/1‑47 (MQ=255) ctcCTACGATTCCGAAATTTTTAAAATATTGCCAGCCTCTATTTAtn < 1:104848/47‑2 (MQ=255) cGATTCCGAAATTTTTTACATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTTACTGCGGTTTTTTTAAATATTATCCTCCCTGGGGGCTACCGACAGGAAAACGTTCTGc > 1:178290/1‑134 (MQ=255) cGATTCCGAAATTTTTAAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGGTAACTGCGATTTTATTTAATATTATACTCCCTGGTGGCTACCCACCGGGAAACGTTCTGCCTGGTATTACCTCAGCGGAAGAGATGGATTACCCGTAAAGGGGTCCATAATGTCAGGAGAACACACGTTAAAAGCGGTACGAGGCAGGTTTAtt > 1:64357/1‑228 (MQ=255) | GCGTCGCTTCACGTTATGTCGGGCGAACCATCGCGGTAATGCTGGTTATCCTCGGCTTATTTCCGATGATTGGCGGCTTCTTCACGACCATTCCCTCGGCAGTTCTGGGAGGCGCAATGACGTTGATGTTTTCCATGATTGCCATCGCAGGGATTCGCATCATCATCACCAACGGTTTAAAGCGCCGTGAAACACTTATTGTCGCCACTTCTTTAGGTTTAGGGCTTGGCGTCTCCTACGATCCCGAAATTTTTAAAATATTGCCAGCCTCTATTTATGTATTAGTTGAAAACCCTATTTGTGCTGGCGGGTTAACTGCGATTTTATTAAATATTATCCTCCCTGGTGGCTACCGACAGGAAAACGTTCTGCCTGGTATTACCTCAGCGGAAGAGATGGATTAACAGTAAAGGAGTCAATGATGTCAGGAGAACACACGTTAAAAGCGGTACGAGGCAGTTTTATT > NC_000913/3025348‑3025813 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |