| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,776,896 | G→A | R7H (CGC→CAC) | ypjJ → | DUF987 domain‑containing protein YpjJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,776,896 | 0 | G | A | 88.9% | 14.4 / ‑3.7 | 10 | R7H (CGC→CAC) | ypjJ | DUF987 domain‑containing protein YpjJ |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (4/4); total (4/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
CCCTGTATTTCAATGCAGCAGCAGTGATACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGAGGTATTACATGAGAATTATCAGTAAACGCCGGGCAATGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTG > NC_000913/2776675‑2777030 | cccggTATGTCAATGCAGCAGCAGTGATACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCCGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGTTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGAGTTATTAAATGATAATTATCAGTAAACACCGGGCAATGACGATATACCGCCAg < 1:421075/243‑1 (MQ=21) tGTATTTCAATGCAGCAGCAGTGATACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCCGGCAGATAAGACTATAAAGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCACATCTATTAGTTCGCAGAACACGGTCTGCTTTGAGGTATTACATGAGAATTATCAGTAAACACCGGGCAATGACGCTATACCGCCAGCATCCTg > 1:285947/1‑251 (MQ=255) ncagTGATACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGAGGTATTACATGAGAATTATCAGTAAACACCGGGCAATGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGc > 1:130428/2‑251 (MQ=255) gcATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGAGGTATTACATGAGAATTATCAGTAAACACCGGGCAAt > 1:72854/1‑197 (MQ=255) cccccTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGCGGCATGCAAGGCTAGTCGTGCGCATAACACGGGCTGCTTTGAGGTAGTACATGAGAAGTATCAGTAAACTCCGGGCTATGACTATACACCGCCAGCATCCTGAGTCCCGa < 1:410121/219‑1 (MQ=21) cGGCGACCCTACTCCCAGCCAGGCAGATAAGTCTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGAGGTATTACATGAGAATTATCAGTAAACACCGGGCAAGGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACgg < 1:444846/251‑1 (MQ=255) cTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGAGGTATTACATGAGAATTATCAGTAAACGCCGGGCAATGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATg < 1:435311/234‑1 (MQ=255) ccgtgtgctcttccgatcgccGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGGCTGCTTTGAGGTATTACATGAGAATTATCAGTAAACACCGGGCAATGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCtg < 1:352565/232‑1 (MQ=14) gATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGAGGTATTACATGAGAATTATCAGTAAACACCGGGCAATGACGATATAnc < 1:395928/123‑1 (MQ=255) aCCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGAGGTATTACATGAGAATTATCAGTAAACACCGGGCAATGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCAtt > 1:137885/1‑179 (MQ=255) | CCCTGTATTTCAATGCAGCAGCAGTGATACTGGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTCAGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGAGGTATTACATGAGAATTATCAGTAAACGCCGGGCAATGACGATATACCGCCAGCATCCTGAGTCCCGAATCTTTCGCTACTGCACCGGAAAATATCAGTGGCACGGTAGCGTCTGTCATTACACCGGCAGGGATGTTCCGGATATCACAGGAGTCCTGGCTG > NC_000913/2776675‑2777030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |