| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,951,988 | C→T | intergenic (+1431/‑213) | ilvX → / → ilvM | uncharacterized protein IlvX/acetolactate synthase II subunit IlvM |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,951,988 | 0 | C | T | 97.0% | 83.8 / NA | 33 | intergenic (+1431/‑213) | ilvX/ilvM | uncharacterized protein IlvX/acetolactate synthase II subunit IlvM |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (14/18); minor base G (0/1); total (14/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCGTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACCCTTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAATTATCATGATGCAACATC > NC_000913/3951761‑3952213 | aCCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCGTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGATCTGGGCACCGTAAAACGCAAGCAGTGACCGTTGAAAATCGTCTTACTCGATAACCAACGTTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACGGATAACCCCGATTTcc < 1:68738/250‑1 (MQ=255) tGGCGCACAAGTCGCGCGACCGAATGATACCGTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTCCTCATGTTAGCCan < 1:54401/234‑2 (MQ=255) gcgcACAAGTCGCGCGACCGAACGATACCGTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCCAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGCTGGATCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTg > 1:270451/1‑204 (MQ=255) cacaAGTCGCGCGACCGAACGATACCGTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTAATCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTcc > 1:408574/1‑216 (MQ=255) gcgcgACCGAACGATTCCGTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGcn < 1:94545/241‑2 (MQ=255) cnACNNAACGNTACCGTTGTCTGTATCTCCGGTGANGGCTCTTTCATGATGAATGTGCAAGAGCTGGNCNCCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCNACGGTTAGGGNTTGNNCGACNANGNCAGCAACTGTTTTTTCAGGAACGATACAGNGAAACCACTCTTACTGATAACCCNNATNNNCTNNTGTTa < 2:365708/213‑1 (MQ=255) cgACCGAACGATACCGTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCAACGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGCTAACCCCGATTTCCTCATGTTa > 1:365708/1‑213 (MQ=255) tttCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTCCTCATg < 1:65849/169‑1 (MQ=255) tttCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTCCTCATg < 1:65841/169‑1 (MQ=255) aaTGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTGCTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACATCGAAACCACTCTTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAg < 1:498603/205‑1 (MQ=255) gCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGGTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGAGACAGCGAAACCACTCTTACTGATAACCCCGATGTCCTCATGTTAGCCAGCGCCTTCGGCATCCAGGTCCAACACATCACCCGTAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATAc < 1:356909/250‑1 (MQ=255) gggCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATg < 1:144239/251‑1 (MQ=255) cACCGTAAACCGCCAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTCCt > 1:111689/1‑138 (MQ=255) cACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACNAACGGTGAGNNATNGTTCGNCNNNGNNNGCNACTGTTTTTTCAGGAACGANACNNCGAAACNACTCTTACTGATAACCCCGATTTCCt < 2:111689/138‑1 (MQ=255) tAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGATCGGGATGGATAGAAAAAGGCAGCAACTGTTTTTTAAGAAACGATAAAGAGAAACCAATCTTACTGATAAACCAGATTTCCTAATGTTAGc > 1:477298/1‑142 (MQ=255) gTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAGACCAGGTTGAAGCgg > 1:387026/1‑169 (MQ=255) tACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTg < 1:67698/248‑1 (MQ=255) cGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCa > 1:384592/1‑204 (MQ=255) gATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGACCGATACAGCGAACCCACTCTTACTGATa > 1:445310/1‑82 (MQ=255) tAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTCCTCATGTTAGCCAgcgcn < 1:53507/109‑2 (MQ=255) ccAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCAGACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTgc < 1:283090/239‑1 (MQ=255) gTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATAcc > 1:216216/1‑185 (MQ=255) gggATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGCTACAGCGAAACCACTCTTACAGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTc > 1:364112/1‑248 (MQ=255) gggATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAAc > 2:32375/1‑69 (MQ=255) gggATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAAc < 1:32375/69‑1 (MQ=255) ttCGACAATGGCAGCAACTGGTTGTTCAGGAACGATACAGCGAAACCACTCGTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCAGCCATgg < 1:68852/103‑1 (MQ=255) cGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGTGCCATACCTGCTTCATGTCTCAATCGACTAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGga < 1:15380/251‑1 (MQ=255) ggCAGCAACTGTTTTTTCAGGAACGATACAGCNAAANCTCGNTTNCTGATAACCCCGACTNCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCANNCNNNANGACCAGGt < 2:360049/121‑1 (MQ=255) ggCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACCACGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCCCCCGGAAAGACCAGGt > 1:360049/1‑121 (MQ=255) gcaACTGTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACACCGATTTCCTCATGTTAGCCAGCGCATTCGGCATcc > 1:334216/1‑86 (MQ=255) gTTTTTTCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTCCTCCTGTTAGCCAGCGCCTTAGGCATCCCTGGCCAACACATCACCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCa > 1:270099/1‑131 (MQ=255) ttttCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTCCGCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAGACCAGTTTGAAGCGGCACGCGACACCATGCTGAACAGTTATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTgc < 1:503630/200‑1 (MQ=255) tCAGGAACGATACAGCGAAACCACTCTTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAATTATCATGATGCAACATc < 1:386685/250‑1 (MQ=255) | ACCATGGGTTTTGGTTTACCGGCGGCGGTTGGCGCACAAGTCGCGCGACCGAACGATACCGTTGTCTGTATCTCCGGTGACGGCTCTTTCATGATGAATGTGCAAGAGCTGGGCACCGTAAAACGCAAGCAGTTACCGTTGAAAATCGTCTTACTCGATAACCAACGGTTAGGGATGGTTCGACAATGGCAGCAACTGTTTTTTCAGGAACGATACAGCGAAACCACCCTTACTGATAACCCCGATTTCCTCATGTTAGCCAGCGCCTTCGGCATCCATGGCCAACACATCACCCGGAAAGACCAGGTTGAAGCGGCACTCGACACCATGCTGAACAGTGATGGGCCATACCTGCTTCATGTCTCAATCGACGAACTTGAGAACGTCTGGCCGCTGGTGCCGCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAATTATCATGATGCAACATC > NC_000913/3951761‑3952213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |