Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	439,909	C→T	G90E (GGA→GAA)	dxs ←	1‑deoxy‑D‑xylulose‑5‑phosphate synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	439,909	0	C	T	100.0%	23.5 / NA	11	G90E (GGA→GAA)	dxs	1‑deoxy‑D‑xylulose‑5‑phosphate synthase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (5/6);  total (5/6)

ATCGCTTCAAACGCCATGCCTGCGGTAATCGCGCCATCGCCAATGACACAGACGGTGCGGCGATTTTTGCCTTCTTTTTCGGCAGCAACCGCAATACCAATTCCGGCACTGATGGAGGTTGATGAATGCCCGACGCTTAATACGTCATATTCGCTTTCGCCGCGCCACGGGAACGGGTGCAGACCGCCTTTCTGACGGATGGTGCCGATTTTGTCGCGGCGTCCGGTCAAAATTTTATGCGGATAAGCCTGATGCCCCACATCCCAAATCAATTGGTCAAACGGGGTGTTGTAGACATAGTGCAGCGCCACGGTCAGTTCGACCGTGCCCAGCCCGGAGGCGAAGTGCCCGCTGGAACGGCTCACGCTGTCGAGTAAATAGCGGCGCAGTTCGTCGCAGAGTTTCGGTA  >  NC_000913/439687‑440095                                                                                                                                                                                                                               |                                                                                                                                                                                           aTCGCTTCAAACGCCATGCCTGCGGTAATCGCGCCATCGCCAATGACACAGACGGTGCGGCGATTTTTGCCTTCTTTTTCGGCAGCAACCGCAATACCAATTCCGGCACTGATGGAGGTTGATGAATGCCCGACGCTTAATACGTCATATTCGCTTTCGCCGCGCCACGGGAACGGGTGCAGACCGCCTTTCTGACGGATGGTGCCGATTTTGTCGCGGCGTTCGGTc                                                                                                                                                                                       <  1:460969/228‑1 (MQ=255)                                                                     gCCTTCTTTTTCGGCAGCAACCGCAATACCAATTCCGGCACTGATGGAGGTTGATGAATGCCCGTCGCTTAATACGTCATATTCGCTTTCGCCGCGCCACGGGAACGGGCGCAGACCGCCTTTCTGACGGATGGTGCCGCTTTTGTCGCGGCGTTCGGTCCCAATTTTATGCGGATAAGCCTGATGCCCCACATCCCAAATCAATTGGTCAAACGGGGTGTTGTAGACATAGTGCAGCGCCACGGTCAGtt                                                                                            >  1:296298/1‑251 (MQ=255)                                                                        ttcttTTTCGGCAGCAACCGCAATACCAAGTCCGGCACTGATGGAGGTTGATGAATGCCCGACGCTTAATACGTCATATTCGCTTTCGCCGCGCCACGGGAACGGGTGCAGACCGCCTTTCTGACGGATGGTGCCGATTTTGTCGCGGCGTTCGGTCAAAATTTTATGCGGATAAGCCTGATGCCCCACATCCCAAATCAATGGGTCAAACGGGGtgttg                                                                                                                        <  1:142697/220‑1 (MQ=255)                                                                                                               gatggatgTTGATGAATGCCCGACGCTTAATACGTCATATTCGCTTTCGCCGCGCCACGGGAACGGGTGCAGACCGCCTTGCTGACGGATGGTGCCGATTTTGTCGCGGCGTTCGGTCAAAATTTTATGCGGATAAGCCTGATGCCCCACATCCCAAATCAATTGGTCAAACGTGGTGTTGTAGACATTGTGCAGCCCCACGTTCAGTTCGTCCGTGCCCAGCCCGGAGTCGAAGTGCCCGCTGGAACGGc                                                  <  1:471201/251‑1 (MQ=255)                                                                                                                         gatgaATGCCCGACGCTTAATACGTCATATTCGCTTTCGCCGCGCCACGGGAACGGGTGCAGACCGCCTTTCTGACGGATGGTGCCGATTTTGTCGCGGCGTTCGGTCAAAATTTTATGCGGATAAGCCTGATGCCCCACATCCCAAATCAATTGGTCAAACGGGGTGTTGTAGACATAGTGCAGCGCCACGGTCAGTTCGACCGTGCCCAGCCCGGAGGCGAAGTGCCCGCTGGAACGGCTCACGCTGTc                                        >  1:248729/1‑251 (MQ=255)                                                                                                                                                   atatTCGCTTTCGCCGCGCCACGTGAACGGGTGCAGACCGCCTTTCTGACGGATGGTGCCGATTTTGTCGCGGCGTTCGTGCAAAATTTTATGCGGATAAGCCTGATGCCCCACATCCCAAATCAATAGGTCAAACGGGGTGTTGTAGACATAGTGCAGCGGCACGGTCAGTTCGACCGTTCCCAGCCCGGAGGCGAAGTGCCCGCTGGAACGGCTCACGCTGTCGAGTAAATAGCGGCGCAGTTCGTCGc              <  1:204223/251‑1 (MQ=255)                                                                                                                                                               gccgcGCCACGGGAACGGGTGCAGACCGCCTTTCTGACGGGTGGTGCCGATTTTGTCGTCGCGTTCGGTCAAAATTTTATGCGGATAAGCCTGATGCCCCACCTCCCAAAGCAATTGGTCAGCCGGGGTGTTGTAGACATAGTGCAGCGCCACGGTCAGTTCGGCCGTGCCCAGCCCTGAGGCGAAGTGCCCGCTTGAACGGCTCACGCGGTCGAGTACATAGCGGCGCAGTTCGTCGAAGAGTTTCGGTa  <  1:296178/251‑1 (MQ=255)                                                                                                                                                                ccgcGCCACGGGAACGGGTGCAGACCGCCTTTCTGACGGATGGTGCCGATTTTGTCGCGGCGTTCGGTCAAAATTTTATGCGGATAAGCCTGATGCCCCACATCCCAAATCAATTGGTAAAACGGGGTGTTGTAGACATAGTGCAGCGCCACGGTCAGTTCGACCGTGCCCAGCCCGGAGGCGAAGTGCCCGCTGGAACGGCTCAAGCTGTAGAGTAAATAGCGGCGAAGTTCGTCGCag            >  1:383483/1‑240 (MQ=255)                                                                                                                                                                                 gTGCAGACCGCCTTTCTGACGGATGGTGCCGAGTTTGTCGCGGCGTTCGGTCAGAATTTTATGCGGATAAGCCTGATTCCCCACATCCCAAATCAATTGGTCAAACGGGGTGTTGTAg                                                                                                                     <  1:472038/118‑1 (MQ=255)                                                                                                                                                                                      gACCGCCTTTCAGACGGATGGTGCCGATTTTGTCGCGGAGGTCGGTCAAAATTTTATGCGGATCAGCCTGATGCCCCACATCCCAACTCAATTGGTCAAACGGGGTGTTGCAGCCCTAGTGCCGCGCCCCGGTCAGTTCGACCGTGCCCAGCCCGGAg                                                                        >  1:73226/1‑158 (MQ=255)                                                                                                                                                                                                                       cgcgGCGTTCGGTCAAAATTTTATGCGGATAAGCCTGATGCCCCACATCCCAAATCAATTGGTCAAACGGGGTGTTGTAGACATAGTGCAGCGCCACGGTCAGTTCGACCGTGCCCAGCCCGGAGGCGAAGTGCCCGCTGGAACGGCTCACGCTGTCgcatcctgc                               >  1:339659/1‑158 (MQ=255)                                                                                                                                                                                                                               |                                                                                                                                                                                           ATCGCTTCAAACGCCATGCCTGCGGTAATCGCGCCATCGCCAATGACACAGACGGTGCGGCGATTTTTGCCTTCTTTTTCGGCAGCAACCGCAATACCAATTCCGGCACTGATGGAGGTTGATGAATGCCCGACGCTTAATACGTCATATTCGCTTTCGCCGCGCCACGGGAACGGGTGCAGACCGCCTTTCTGACGGATGGTGCCGATTTTGTCGCGGCGTCCGGTCAAAATTTTATGCGGATAAGCCTGATGCCCCACATCCCAAATCAATTGGTCAAACGGGGTGTTGTAGACATAGTGCAGCGCCACGGTCAGTTCGACCGTGCCCAGCCCGGAGGCGAAGTGCCCGCTGGAACGGCTCACGCTGTCGAGTAAATAGCGGCGCAGTTCGTCGCAGAGTTTCGGTA  >  NC_000913/439687‑440095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑