| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,370,821 | C→T | Y202Y (TAC→TAT) | ycjM → | glucosylglycerate phosphorylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,370,821 | 0 | C | T | 93.3% | 36.2 / NA | 15 | Y202Y (TAC→TAT) | ycjM | glucosylglycerate phosphorylase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (9/5); minor base G (0/1); total (9/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GATTTTGTCTGCAACCATATGTCGGCAAAAAGTGAATGGTTTAAAAACTATTTACAACAGCATCCAGGTTTTGAAGATTTTTTTATTGCCGTTGACCCGCAAACCGATCTCAGCGCCGTCACTCGCCCGCGTGCGTTACCGTTATTAACGCCATTCCAGATGCGCGATCATTCAACGCGCCATTTATGGACCACCTTTAGTGACGATCAAATTGACCTGAATTACCGTAGCCCTGAAGTGTTGCTGGCGATGGTGGATGTTTTACTCTGTTACCTTGCGAAAGGTGCTGAGTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCGAGACCAATGTTCCGCATAAAGAC > NC_000913/1370597‑1371049 | gATTTTGTCTGCAACCATATGTCGGCAAAAAGTGAATGGTTTAAAAACTATTTACAACAGCATCCAGGTTTTGAAGATTTTTTTATTGCCGTTGACCCGCAAGCCGATCTCAGCGCCGTCACTCGCCCGCGTGCGTTACCGTTATTAACGCCATTCCAGATGCGCGATCATTCAACGCGCCATTTATGGACCACCTTTAGTGACGATCAAATTGACCTGAATTATCGTAGCCCTGAAGTGTTGCTGGCGa < 1:164351/250‑1 (MQ=255) aCCATATGTCGGCAAAAAGTGAATGGTTTAAAAACTATTTACAACAGCATCCAGGTTTTGAAGATTTTTTTATTGCCGTTGACCCGCAAACCGATCTCAGCGCCGTCACTCGCCCGCGTGCGTTACCGTTATTAACGCCATTCCAGATGCGCGCTCCTTCAACGCGCCATTTATGGACCACCTTTAGTGACGATCAAATTGACCTGAATTCTCGTAGCCCTGACGTGTTGCTGGCGATGGTGGATGtttt > 1:8917/1‑250 (MQ=255) ggCAAAAAGTGAATGGTTTAAAAACTATTTACAACAGCATCCAGGTTTTGAAGATTTTTTTATTGACGTTGACCCGCAAACAGATCTCAGCGCCGTCACTCGCCCGCGTGCGTTACCGTTATTAACGCCATTCCAGATGCGCGATCATTCAACGCGCCATTTATGGACCACCTTTAGTGACGATCAAATTGACCTGAATTATCGTAGCCCTGAAGTGTTGCTGGCGATGGTGGATGTTTTACTCTGTTAcc > 1:268548/1‑251 (MQ=255) aGATTTTTTTATTGCCGTTGACCCGCAAACCGATCTCAGAGCCGTCACTCGCCCGCGTGCGTTACCGTTATTAACGCCATTCCAGATGCGCGATCCTTCAACGCGCCATTTATGGACCACCTTTAGTGAAGATCAAATTGACCTGAATTATCGTAGCCCTGAAGTGTTGCTGGCGATGGTGGATGTTTTACTCTGTTACCTTGCGAAAGGTGCTGAGTATGt > 1:210648/1‑222 (MQ=255) aaCCGATCTCAGCGCCGTCACTCGTCCGCGTGCGTTACCGTTATTAACGCCATTCCAGATGCGCGATCATTCAACGCGCCATTTATGGACCACCTGTAGTGACGATCAAATTGACCTGAATTAGCGTAGCCCTGAAGTGTTGCTGGCGATGGTGGATGTTTTACTCTGTTACCTTGCGAAAGGTGCTGAGTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGcatccatc < 1:26921/251‑1 (MQ=255) gATCTAAGCGCCGTCACTCGCCCGCGTGCGTTACCGTTATTAACGCCATTCCAGATGCGCGATCATTCAACGCGCCATTTATGGACCACCTTTAGTGACGATCAAATTGACCTGAATTATCGTAGCCCTGAAGTGTTGCTGGCGATGGTGGATGTTTTACTCTGTTACCTTGCGAAAGGTGCTGAGTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTgg > 1:108055/1‑250 (MQ=255) cAGCGCCGTCACTCGCCCGCGTGCGTTACCGTTATTAACGCCATTCCAGCTGCGCGATCATTCCACGCGACATTTATAGACCCCCTTTAGTGACGATCAAATTGACATGAATTTTCGTAACCATGAAGTGTTGCTGGCGATGGGGGATGTTTTACTCTGTTCCCTTGCGAAAGGAGCTGAGTATGTCCGCCAGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCCTCTGGaaaaa > 1:444605/1‑250 (MQ=255) ccGTTATTAACGCCATTCCAGATGCGCGATCATTCAACGCGCCATTTATGGACCACCTTTAGTGACGATCAAATTGACCTGCATTATCGTAGCCCTGCAGTGTTGCTGGCGATGGTGGATGTTTTACTCTGTTACCTTGCGAAAGGTGCTGAGTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGACAAAACACATCTGATTATCAAACTGTTACGGTc > 1:480516/1‑251 (MQ=255) ccATTCCAGATGCGCGATCATTCAACGCGCCATTTATGGACCACCTTTAGTGACGATCAAATTGACCTGCATTATCGTAGCCCTGAAGTGTTGCTGGCGATGGTGGATGTTTTACTCTGTTACCTTGCGAAAGGTGCTGAGTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGCAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATa > 1:493214/1‑250 (MQ=255) gcgcCNNTTNNNGANNACCTTTAGTGACGATCAAATTGANCTGAATTATCGTAGCCCTGAAGTGTTGCTNGNGNTGGTNNATGNTTTACTCTGTNACCTTGCGAAAGGTGc > 2:376572/1‑111 (MQ=255) gcgcCATTTATGGACCACCTGTAGTGACGATCAAATTGACCTGAATTATCGTAGCCCTGAATTGTTGCTGGCGATGGTGGATGTTTTACTCTGTTACCTTGCGAAAGGTGc < 1:376572/111‑1 (MQ=255) tNNGGACCANNTTTAGTGACGATCAAATTGACCTGAATTATCGTAGCCCTGAAGTGTTGCTGGCGATGGTGGATGTTTTACTCTGTTACCTTGCGAAAg < 2:8917/99‑1 (MQ=255) tATGGACCACCTTTAGTGACGATCAAATTGACCTGAATTATCGTAGCCCTGAAGTGTTGCTGGCGATGGTGGATGTTTTACTCTGTTACCTTGCGAAAGGTg < 1:212271/102‑1 (MQ=255) cGATCAAATTGACCTGAATTATCGTAGCCCTGAAGTGTTGCTGGCGATGGTGGATGTTTTACTATGTTACCTTGCGAAAGGTGCTGAGTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACCAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTCTTGATAACGTTGCGCCAGGTACAGTGATCATTACCGAGACCAATGTTCCGCATAAAGac > 1:449468/1‑250 (MQ=255) aCCTGAATTATCGTAGCCCTGAAGTGTTGCTGGCGATGGTGGATGTTTTACTCTGTTACCTTGCGAAAGGTGCTGAGTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAAcn < 1:97215/189‑2 (MQ=255) | GATTTTGTCTGCAACCATATGTCGGCAAAAAGTGAATGGTTTAAAAACTATTTACAACAGCATCCAGGTTTTGAAGATTTTTTTATTGCCGTTGACCCGCAAACCGATCTCAGCGCCGTCACTCGCCCGCGTGCGTTACCGTTATTAACGCCATTCCAGATGCGCGATCATTCAACGCGCCATTTATGGACCACCTTTAGTGACGATCAAATTGACCTGAATTACCGTAGCCCTGAAGTGTTGCTGGCGATGGTGGATGTTTTACTCTGTTACCTTGCGAAAGGTGCTGAGTATGTCCGCCTGGATGCCGTTGGCTTTATGTGGAAAGAGCCGGGAACAAGCTGCATCCATCTGGAAAAAACACATCTGATTATCAAACTGTTACGGTCGATTATTGATAACGTTGCGCCAGGTACAGTGATCATTACCGAGACCAATGTTCCGCATAAAGAC > NC_000913/1370597‑1371049 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |