Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 4,399,673 | G→A | G141D (GGT→GAT) | miaA → | tRNA dimethylallyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,399,673 | 0 | G | A | 94.4% | 37.4 / NA | 18 | G141D (GGT→GAT) | miaA | tRNA dimethylallyltransferase |
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (12/5); minor base C (1/0); total (13/5) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 |
CGCAGGCTTACTCGGCTGCTGATTTTCGCCGCGATGCGCTGGCGGAAATGGCCGATATCACCGCGGCGGGGCGGATCCCACTGTTAGTGGGCGGTACGATGTTGTATTTCAAGGCATTGCTGGAAGGGTTGTCGCCGCTACCGTCGGCAGACCCGGAAGTACGGGCCAGAATTGAGCAACAGGCGGCAGAGCAAGGTTGGGAGTCATTGCATCGTCAACTTCAGGAGGTAGATCCGGTTGCGGCAGCAAGGATTCATCCAAATGATCCACAAAGGCTTTCCCGGGCACTGGAAGTTTTTTTCATTTCGGGTAAAACTTTAACGGAACTGACGCAAACGTCAGGAGACGCTCTACCGTATCAGGTGCATCAGTTCGCCATCGCCCCGGCGAGCCGTGAACTGCTCCATCAACGCATTGAGCAGCGTTTTCATCAGATGTTG > NC_000913/4399478‑4399917 | cGCAGGCTTACTCGGCTGCTGATTTTCGCCGCGATGCGCTGGCGGAAATGGCCGATATCACCGCGGCGGGGCGGATCCCACTGTTAGTGGGCGGTACGATGTTGTATTTCAAGGCATTGCTGGAAGGGTTGTCGCCGCTACCGTCGGCAGACCCGGAAGTACGGGCCAGAATTGAGCAACAGGCGGCAGAGCAAGATTGGGAGTCATTGCATCGTCAACTTCAGGAGGTAGATCCGGTTGCGGCAGCAAg < 1:289698/250‑1 (MQ=255) ggCTGCTGATTTTCGCCGCGATGCGCTGGCGGAAATGGCCGATATCACCGCGGCGGGGCGGATCCCACTGTTAGTGGGCGGTACGATGTTGTATTTCCAGGCATTGCTGGAAGGGTTGTCGCCGCTACCGTCGGCAGACCCGGAAGCACGGGCCAGCATTGAGCAACAGGCGGCAGAGCAAGATTGGGAGTCATTGCATCGTCCACTTCAGGAGGt > 1:374163/1‑216 (MQ=255) gctgATTTTCGCCGCGATGCGCTGGCGGAAATGGCCGATATCTCCGCGGCGGGGCGGATCCCACTGTTAGTGGGCGGTACGATGTTGTATTTCAAGGCATTGCTGGAAGGGTTGTCGCCGCTACCGTCGGCAGACCCGGAAGTACGAGCCAGAAGTGAGCAACAGGCGGCAGAGCAAGATTGGGAGTCATTGCTTCTCCAACTTCAGGAGGTAGATCCGGTTGCGGCAGCAAGGATTCATCCAAATGATcc < 1:458519/251‑1 (MQ=255) gATTTTCGCCGCGATGCGCTGGCGGAAATGGCCGATATAACCGCGGCGGGGCGGATCCCACTGTTCGTCGGCGGTACGATGTTGAATTTCAAGGCATTGCTGGAAGGGTTGTCGCCGCTACCGTCGGCAGACCCGGAAGTACGGGCCAGAATTGAGCAACAGGCGGCAGAGCAAGATTGGGAGTCATTGCATCGTCAACTTCAGGAGGTAGATCCGGTTGCGGCAGCCAGGATTCATCCAAATGATCcac > 1:483704/1‑250 (MQ=255) aaTGCGCTGGCGGAAATGGCCGATATCACCGCGGCTGGGCGGATCCCACTGTTACTGGGCGGTACGATGTTGTATTTCAAGGCATTGCTGGAAGGGTTGTCGCCGCTACCGTCGGCAGACCAGGCAGTAAGGGCCAGAATTGAGCAACAGGCGGCGGAGCAAGATTGGGAGTCATTGCATCGTCGACTACAGGAGGAAGATCCGGTTGCGGCAGCAAGGATTCATACAAATGATCCAACAAGGCTTTCCCg > 1:30715/2‑251 (MQ=255) ngCGGAAATGGCCGATATCACCGCGGCGGGGCGGATCCCACTGTTAGTGGGCGGTACGATGTTGTATTTCAAGGCATTGCTGGAAGGGTTGTCGCCGCTACCGTCGGCAGACCCGGAAGTACGGGCCAGAATTGAGCAACAGGCGGCAGAGCAAGATTGGGAGTCATTGCATCGTCAACTTCAGGAGGTAGATcc > 1:100815/2‑195 (MQ=255) ggggcggATCCCACTGTGAGTGGGCGGTACGATGTTGTATTTCAAGGCATTGCTGGAAGGGTTGTCGCCGCTACCGTCGGCAGACCCGGAAGTACGGGCCAGAATTGAGCAACAGGCGGCAGAGCAAGATTGGGAGTCATTGCATCGTGAACTTCAGGAGGTAGATCCGGTTGCGgc < 1:160071/177‑1 (MQ=255) ccACTGTTCGTGGGCGGTACGATGTTGTATTTCAAGGCATTGCTGGAAGGGTTGTCGCCGCTACCGACGGCAGACCCGGAAGTACGGGCCAGAATTGAGCAACAGGCGGCAGAGCAAGATTGGAAGTCATTGCATCGTCAACTTCagga > 1:448497/1‑149 (MQ=255) ggCATTGCTGGAAGGGTTGTCGCCGCTACCGTCGGCAGACCCGGAAGTACGGGCCAGAATTGAGCAACAGGCGGCAGAGCAAGATTGGGAGTCATTGCATCGTCAACTTCAGGAGGTAGATCCGGTTGCGGCAGCAAGGATTCATCCAAATGATCCACAAAGGCTTTCCCGGGCACTGGAAGTTTTTTTCATTTCGTGTAAAACTTTAACGGAACTGACGCAAACGTCAGGAGACGCTCTACCGTATCAgg < 1:479113/251‑1 (MQ=255) gTCGCCGCTACCGTCGGCAGACCCGGAAGTACGGGCCAGAATTGAGCAACCGGCGGCAGAGCAAGATTGGGAGTCATTGAATCGTCAACTTCAGGAGGTAGATCCGGTTGCGGCAGCAAGGATTCATCCAAATGATCCACAAAGGCTTTCCCGGGCACTGGAAGTTTTTTTCATTTCGGGTAAAACTTTAACg > 1:212244/1‑193 (MQ=255) aCCGTCGGCAGACCCGGAAGTACGGGCCAGAATTGAGCAACAGGCGGCAGAGCAAGATTGGGAGTCATTGCATCGTCAACTTCAGGAGGTAGATCCGGTTGCGGCAGCaa > 1:41553/1‑110 (MQ=255) cGTCGGCAGACCCGGAAGTACGGGCCAGAATTGAGCAACAGGCGGCAGAGCAAGATTGGGAGTCATTGCATCGTCAACTTCAGGAGGTAGATCCGGTTGCGGCAGCAAGGATTCATCCAAATGATCCACAAAGGCTTTCCCGGGCACTGGAAGTTTTTTTCATTTCGGGTAAAACTTTAACGGAACTGACGCAAACGTCAGGAGACGCTCTACCGTATCAGGTGCATCAGTTCGCCATCGCCCCGGCGAGc > 1:388283/1‑251 (MQ=255) cGGCAGACCAGGAAGTACGGGCCAGCATTGAGCAACAGGCGGCAGAGCAAGATTGGGGGTCATTGCCTCGTCAACTTCAGGAGGTAGATCCGGTTGCGGCAGCAAGGATTCATCCAAATGATCCTCAACGGCTTTCCCGGGCACTGGACGtttttt > 1:482355/1‑156 (MQ=255) cccGGAAGTACGGGCCAGAATTGAGCAACAGGCGGCAGAGCAAGATTGGGAGTCAttn < 1:309801/58‑2 (MQ=255) cccGGAAGTACGGGCCAGAATTGAGCAACAGGCGGCAGAGCAAGATTGGGAGTCATTg > 2:309801/1‑58 (MQ=255) cggcAGAGCAAGATTGGGAGTCATTGAATCGTCAACTTCAGGAGGTAGATCCGGGTGCGGCAGCAAGGATTCATCCAAATGATCCACACAGGCTTTCCCGGGCACTGGAAGTTTTTTTCATTTCGGGTAAAACTTTAACGGAACTGACGCAAACGTCAGGAGACGCTCTACCGTATCAGGTGCATCAGTTCGCCATc > 1:120330/1‑197 (MQ=255) agCAAGCTTGGGAGTCATTGCATCGTCAACTTCAGGAGGTAGCTCCGGTTGAGGCAGCAAGGATTCATCCACATGCTCCACAAAGGCTTTCCCGGGCACTGGAAGTTTTTTTCATTTCGAGTAAAACTTTAACGGAACTGACGCAAACGTCAGGAGACGCTCTACCGTATCAGGTGCATCAGTTCGCCATCGACCCGGCGAGCCGTGAACTGCTCCATCAACGCATTGAGCAGCGTTTTCATCAGATGTTg > 1:64342/1‑251 (MQ=255) gCAAGATTGGGAGTCATTGCATCGTCAACTTCAGGAGGTAGATCCGGGTGCGGCAGAAAGGATTCATCCAAATGATCAACCAAGGCTTTCCCGGGCACTGGAAGTTTTTTTCATTTCGGGTAACACTTTAACGGAACTGCCGCAAACGTCAGGAGACGCTCTACCGTATCAGGTGCATCAg > 1:495669/1‑181 (MQ=255) | CGCAGGCTTACTCGGCTGCTGATTTTCGCCGCGATGCGCTGGCGGAAATGGCCGATATCACCGCGGCGGGGCGGATCCCACTGTTAGTGGGCGGTACGATGTTGTATTTCAAGGCATTGCTGGAAGGGTTGTCGCCGCTACCGTCGGCAGACCCGGAAGTACGGGCCAGAATTGAGCAACAGGCGGCAGAGCAAGGTTGGGAGTCATTGCATCGTCAACTTCAGGAGGTAGATCCGGTTGCGGCAGCAAGGATTCATCCAAATGATCCACAAAGGCTTTCCCGGGCACTGGAAGTTTTTTTCATTTCGGGTAAAACTTTAACGGAACTGACGCAAACGTCAGGAGACGCTCTACCGTATCAGGTGCATCAGTTCGCCATCGCCCCGGCGAGCCGTGAACTGCTCCATCAACGCATTGAGCAGCGTTTTCATCAGATGTTG > NC_000913/4399478‑4399917 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |