New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1299499 =	NA (NA)	14 (0.790)	12/254	0.2	100%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	1300694 =	0 (0.000)					intergenic (+147/‑488)	insH21/oppA	IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

ACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACC  >  NC_000913/1300488‑1300918                                                                                                                                                                                                               |                                                                                                                                                                                                                                 ggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcaggacaagaaaatttcttttctggtctgacggcgcttactgctgaattccctgtcggcgaaggtaagttgatgcctcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTgg                                                                                                                                                                                      >  1:70005‑M2/207‑251 (MQ=255)                                                                  ngaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAA‑TATTGTGCATTTCACTACTGGAACTGCAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGAtgtttgt                                                                                                                    >  1:314365‑M2/142‑251 (MQ=255)                                                                                             ncttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAAtct                                                                                                                                                >  1:147264‑M2/115‑197 (MQ=255)                                                                                                    gctgaattcactgtcggcgaaggtaagttgatgactcataatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAatta                                                                                                                                                                                                         >  1:265560‑M2/108‑133 (MQ=255)                                                                                                                         ggtaagttgatgactcatgatgaaccctgctctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATtg                                                                                                                                                                                                      >  1:164688‑M2/87‑115 (MQ=255)                                                                                                                             aattgatgactcatgatgaaccctgttctatggcttcagatgacaaacatgatctcatatcaggtacttgttcgcgccttccCTAAATAATAATCAATGGTTAAATTAGTGTGCATTTCACTACGGGACCTGTAATCAGAGAAGAGAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGGTAAGGCATGGATGCAAGCGATAGATTCTGa                                                                                      <  1:191726‑M2/141‑1 (MQ=255)                                                                                                                                    gactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAAGAAAAGAGAATTGCTTAACAATTTTg                                                   <  1:143106‑M2/176‑1 (MQ=255)                                                                                                                                        catgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGaaa                                                                                                                             >  1:389575‑M2/72‑173 (MQ=255)                                                                                                                                              gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATttgattga                                                                                                                                    <  1:12338‑M2/95‑1 (MQ=255)                                                                                                                                                            ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGc                                                                                                                                                      >  1:23850‑M2/52‑128 (MQ=255)                                                                                                                                                                     tgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGc                                                                                                                                                           <  1:328386‑M2/72‑1 (MQ=255)                                                                                                                                                                                    catatcagggacttgttcgcaccttccATAAATAAGAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCGATAGATTCTGATACGGTCAATAAAAGAGAAGGGCTTAACAATTTTGCAAAATGTATTGACGAGTAAGAACCGCATTTGGTACTTTCCggg       <  1:372323‑M2/220‑1 (MQ=255)                                                                                                                                                                                     atatcagggacttgttcgcaccgtccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCGATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGACGAGTAAGAACCGCATTTGGTACTTTCCGGGCAAcc  <  1:337883‑M2/225‑1 (MQ=255)                                                                                                                                                                                           nggacttnntcgcaccttccCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGc                                                                                                                                                      <  2:23850‑M2/77‑1 (MQ=255)                                                                                                                                                                                                               |                                                                                                                                                                                                                                 ACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACC  >  NC_000913/1300488‑1300918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.