| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 455,171 | C→T | R13R (CGC→CGT) | tig → | trigger factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 455,171 | 0 | C | T | 95.0% | 40.8 / NA | 20 | R13R (CGC→CGT) | tig | trigger factor |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (8/11); total (9/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01 | |||||||||||
CGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAACATCCCGGTTCCGCGAAGCCAACAACCTGTGCTTGCGGGGTAAGAGTTGACCGAGCACTGTGATTTTTTGAGGTAACAAGATGCAAGTTTCAGTTGAAACCACTCAAGGCCTTGGCCGCCGTGTAACGATTACTATCGCTGCTGACAGCATCGAGACCGCTGTTAAAAGCGAGCTGGTCAACGTTGCGAAAAAAGTACGTATTGACGGCTTCCGCAAAGGCAAAGTGCCAATGAATATCGTTGCTCAGCGTTATGGCGCGTCTGTACGCCAGGACGTTCTGGGTGACCTGATGAGCCGTAACTTCATTGACGCCATCATTAAAGAAAAAATCAATCCGGCTGG > NC_000913/454937‑455395 | cgACAGCGCGCACTAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAACATCCCGGTTCCGCGAAGCCAACAACCTGTGCTTGCGGGGGAAGAGTTGACCGAGCATTGTGATTTTTTGAGTTAACAAGATACAAGTTACAGTTGAAACCACTCAAGGCCTTGGCCGTCGTGTAACGAATACt > 1:43137/1‑250 (MQ=255) cAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAACATCCCGGTTCCGCGACGCCAACAACCTGTGCCTGCGGGGTAAGAGTTGACCGAGCACTGTGATTTTTTGAGGTAACAAGATGCAAGTTTCAGTTGAAACCACTCAAGGCCTTGGCCGTCGTGTAACGATTACTATCg > 1:188943/1‑251 (MQ=255) tAACCGTTATCGACTGATAAAAGAGATGCCGCTATAATGAAGAGTCCTATTTCAATGCTTTCGGGATGATTCGGATAACAGGGAATGTGATTCATTATAAGAGCAGCCCGGATCCGCGGAGCCAACAACCAGTGATTGCGGGGTAAGAGTTGACGGAGCACTGTGATTTTTTGAGGTAAATAGATGCATGTTTAAGTTGAAACCACTAAAGTCCTTGGCTGTCGTGTAACGATTACTATAGCTGCTGAc > 1:68120/1‑249 (MQ=255) gACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAACATCCCGGTTCCGCGAAGCCAACAACCTGTGCTTGCGGGGTAAGAGTTGACCGAGCTCTGTGATTTTTTGAGGTAACAAGATGCAAGTTTCAGTTGAAACCACTCAAGGCCTTGGCCGTCGTGTAACGATTACTATCGCTGCTGACAGCATCGAGAcc > 1:503191/1‑250 (MQ=255) gCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATGCTGGTAACAGGGAATTTGATTGATTATAAGAACATCCCGGTTCCGCGAAGCCAACAACCTGTGCTTGCGGGGTAAGAGTTGACCGAGCTCTGTGATTTTTTGAGGTAACAAGATGCAAGTTTCAGTTGAAACCACTCAAGGCCTTGGCCGTCGTGTAACGATTACTATCGCTGCTGACAGCATCGAGACCGCTGTTAAAAGCGAGc < 1:117485/250‑1 (MQ=255) tGGTAACAGGGAATGTGATTGATTATAAGAACATCCCGGTTCCGCGAAGCCAACAACCTGTGCTTGCGGGGTAAGAGTTGACCGAGCACTGTTATTTTTTGAGGTAACAAGATGCAAGTTTCAGTTGAAACCACTCAAGGCCTTGGCCGTCGTGTAACGATTACTATCGCTGCTGACAGCATCGAGACCGCTGTTAAAAGCGAGCTGGTCAACGTTGCGAAAAAAGTACGTATTGACGGCTTCCgcaaag < 1:32471/250‑1 (MQ=255) ggTTCCGCGAAGCCAACAACCTGTGCTTGCGGGGTAAGAGTTGACCGAGCACTGTGATTTTTTGAGGTAACAAGATGCAAGTTTCAGTTGAAACCACTCAAGGCCTTGGCCGTCGTGTAACGATTACTATCGCTGCTGACAGCATCGAGACCGCTGTTAAAAGCGAGCTGGTCAACGTTGCGAAAAAAGTACGTATTGACGGCTTCCGCAAAGGCAAAGTGCCAATGAATATCGTTGCTCAGCGTTATGgc < 1:155668/251‑1 (MQ=255) cgAAGCCAACAACCTGTGCTTGCGGGGTAAGAGTTGACCGAGCACTGTGATTTTTGGAGGTAACAAGATGCAAGTTTCAGTTGAAACCACTCAAGGCCTTGGCCGTCGTGTAACGATTACTATCTCTGCTGACAGCATCTAGACCGCTGTTAAAAGCGAGCTGGTCAACGTTGCGAAAAAAGTACGTATTGACGGCTTCCGCAAAGGCAAAGTGCCAATGAATATCGTTGCTCAGCGTTATGGCGCGTCTg < 1:359527/251‑1 (MQ=255) gAAGCCAACAACCTGTGCTTGCGGGGCAAGAGTTTACCGAGCACTGTGACTTGGGGAGGTAACAAGATGCAAGTTTCAGTTAAAACCACTCAAGGCCTTGTCCGTCGTGTAACGATTACTATCGCTGCTGAc < 1:430875/132‑1 (MQ=255) cTGTGCTTGCGGGGTAAGAGTTGACCGAGCACTGTGATTTTTTGAGGTAACAAGATGCAAGTTTCAGTTGAAACCACTCAAGGCCTTGGCCGTCGTGTAACGATTACTATCGCTGCTGACAGCATCGAGACCGCTGTTAAAAGCGAGCTGGTCAACGTTGCGAAAAAAGTACGTATTGACGGCTTCCGCAAAGGCAAAGTGcc > 1:7941/1‑203 (MQ=255) cTTGCGGGGTAAGAGTTGACCGAGCACTGTGATTTTTTGAGGTAACAAGATGCAAGTTTCAGTTGAAACCACTCAAGGCCTTGGCCGCCGTGTAACGATTACTATCGCTGCTGCCAGCATCGAGACCGCTGTTAAAAGCGAGCTGGTCAACGTTGCGAAAAAAGTACGTATTGACGGCTTCCgcaaagg > 1:412612/1‑189 (MQ=255) gTAAGAGTTGACCGAGCACTGTGATTTTTTGAGGTAACAAGCTGCAAGTTTCCGTTGAAACCACTCAAGGCCTTGGCCGTAGTGTCAAGATTACTATCGCTGCTGACAGCATCGAGACCGCTGTTAAAAGCGAg > 1:498745/1‑134 (MQ=255) gTTGACCGAGCACTGTGATTGTTTGAGGTAACAAGATGCAAGTTTCAGTTGAAACCACTCAAGGCCTTGGCCGTCGTGTAACGATTACTATCGCTGCTGACAGCATTGAGACCGCTGTTAAAAGCGAGCTGGTCAACGTTGCGAAAAAAGTACGTATTGACGGCTTCCGCAAAGGCAAAGTGCCAAGGAATATCGTTGCTCAGCGTTATGGCGCGTCTGTACGCCGGGACGTTCTGGGTGACCTGATGAgn < 1:148271/251‑2 (MQ=255) ccGAGCACTGAGATTGTTGGAGGCAGCAAGATGCAAGTTTCAGGTGAAACCACTCAATACCGTGGCCGTCGTGTATCTATTACTAGCGCTGCTGACAGCATCGAGACCGCTGTTAAAAGCGAGCTGGTCAACGTTGCGAAAAAAGTACGTATTGACGGc < 1:507489/159‑1 (MQ=255) cAAGATGCAAGTTTCAGTTGAAACCACTCAAGGCCTTGGCCGTCGTGTAACGATTACTATCGCTGCTGACAGCATCGAGACCGCTGTTAAAAGCGAGCTGGTCAACGTTGCGAAAAAAGTACGTAGTGACGGCTTCCGCAAAGGCAAAGTGCCAATGAATATCGTTGCTCAGCGTTATGgcg < 1:504237/182‑1 (MQ=255) gTTGAAACCACTCAAGGCCTTGGCCGTCGTGTAACGATTACTATCGCTGCTGACAGCATCGAGACCGCTGTTAAAAGCGAGCTGGTCAACGTTGCGAAAAAAGTACGTATTGACGGCTTCCGCAAAGGCAAAGTGCCAATGAATATCGTTGCTCAGCGTTATGGCGCGTCTGTACGCCAGGACGTTCTGGGTGACCTGATGAGCCGTAACTTCAGTGACGCCATCATTAAAGAAAAAATCAATCCGGCTgg < 1:389647/251‑1 (MQ=255) cAAGGCCTTGGCCGTCGTGTAACGATTACTATCGCTGCTGACAGCATCGAGACCGCTGTTAAAAGCGAGCTGGTCAACGTTGCGAAAAAAGTACGTATTGACGGCTTCCGCAAAGGCAAAGTGCCAATGAATATCGTTGc > 1:398240/1‑140 (MQ=255) cAAGGCCTTGGCCGTCGTGTAACGATTACTATCGCTGCTGACAGCATCGAGACCGCTGTTAAAAGCGAGCTGGTCAACGTTGCGAAAAAAGTACGTATGGACGGCTTCCGCAAAGGCAAAGTGCCAAGGAAGATCGTTGCTCAGCGt < 1:428651/147‑1 (MQ=255) ttGGCCGTCGTGTAACGATTACTATCGCTGCTGACAGCATCGAGACCGCTGTTAAAAGCGAGCTGGTCAACGTTGCGAAAAAAGTACGTATTGACGGCTTCCGCAAAGGCAAAGTGCCAATGAATATCGTTGCTCAGCGTTATGGCGCGTCTGTACGCCAGGACGTTCtn < 1:316711/170‑2 (MQ=255) ttGGCCGTCGTGTAACGATTACTATCGCTGCTGACAGCATCGAGACCGCTGTTAAAAGCGAGCTGGTCAACGTTGCGAAAAAAGTACGTATTGACGGCTTCCGCAAAGGCAAAGTGCCAATGAATATCGTTGCNCAGNNNNNTgnn > 2:316711/1‑144 (MQ=255) | CGACAGCGCGCAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGGTAACAGGGAATGTGATTGATTATAAGAACATCCCGGTTCCGCGAAGCCAACAACCTGTGCTTGCGGGGTAAGAGTTGACCGAGCACTGTGATTTTTTGAGGTAACAAGATGCAAGTTTCAGTTGAAACCACTCAAGGCCTTGGCCGCCGTGTAACGATTACTATCGCTGCTGACAGCATCGAGACCGCTGTTAAAAGCGAGCTGGTCAACGTTGCGAAAAAAGTACGTATTGACGGCTTCCGCAAAGGCAAAGTGCCAATGAATATCGTTGCTCAGCGTTATGGCGCGTCTGTACGCCAGGACGTTCTGGGTGACCTGATGAGCCGTAACTTCATTGACGCCATCATTAAAGAAAAAATCAATCCGGCTGG > NC_000913/454937‑455395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |