| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,842,448 | C→T | intergenic (‑46/+7) | yicN ← / ← adeQ | DUF1198 domain‑containing protein YicN/adenine transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,842,448 | 0 | C | T | 92.9% | 31.6 / NA | 14 | intergenic (‑46/+7) | yicN/adeQ | DUF1198 domain‑containing protein YicN/adenine transporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (9/4); minor base G (0/1); total (9/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 | |||||||||||
ACCAGCTGACTTTCCCATTTGATCGACCATCGACTCCACGGGTACGACATCGATGTT‑CAGCCGATCGCTGAGACGGCGAATCGCTTTTCTGGCCCCGGATGTCAGCACCCGAAAACCAACCACAAACACTACCGCCAGCGTGGCGAGCATTATCCAGATCATGAGTTCTCCTGCGTAATCAGAACTCATGATATCTGGAAACCCTCGCCAGTTACTAATCCACCAGAATAATCTTCAGTGCAAACAGAGCTGCGACCACCACCACACACAGGTTCAGATCGCGCCAGCGCCCGGTGCATACTTTCATGATGCAGTACGACATAAAGCCGAGTGCAATCCCTTCGGTGATCGAGAAAGTAAAGGGCATCATCACCG > NC_000913/3842241‑3842615 | aCCAGCTGACTTTCCCATTTGATCGACCATCGACTCCACGGGTACGACATCGATGTT‑CAGCCGATCGCTGAGACGGCGAATCGCTTTTATGGTCCCGGATGTCAGCACCCGAAAACCAACACCAAACACTAACGCCAGCGAGGCGAGCATTATCCAGATCATGAGTTCTCCTGCGTAATCAGAACTCATGATCTCTGGAAACACTCGTCAGTTACTAATCCACCAGAATAATCTTCAGTGCAAAAAGAGCt > 1:348928/1‑251 (MQ=255) aGCTGACTTTCCCATTTGATCGACCATCGACTCCACGGGTACGACATCGATGTT‑CAGCCGCTCGCTGAGACGGCGAATCGCTTTTCTGGCCCCGGATGTCAGCACCCGAAAACCAACCACAAACCCTACCGCCAGCGTGGCGAGCATTATCCAGATCATGAGTTCTCCTGCGTAATCAGAACTCATGATATCTGGAAACCCTCGTCAGTTACTAATCCACCAGAATAATCTTCAGTg > 1:278758/1‑237 (MQ=255) gtgtctcATTTGAGTGACCAGCGACTCCACGGGTACGCCATCGA‑GTTGCTGCCGATCGTGGAGACGGCGAATCGCTTTTGTTGCCCTGGGTGCTACCGCCCGAAACCCATCCACAATCATTACCGCCAGCGTGGCGAGCATTATGCAGATCAGGAGTTCTCCTGCGTAATCAGAACTCATTATATCTCAAAACCCTCGTCAGTTACTAATCCACCAGAATAATCTTCAGTGCCAACagag < 1:346503/234‑1 (MQ=255) tcgcggaggcagCGAATCGCTTTTCTGACCCCGGATGTCAGCACCCAAAAACCAACCACAAACACTACCGCCAGCGTGGCGAGCATTATCCAGATCATGAGTTCTCCGGCGTAATCAGAACTCATGATATCTGGAAAGCCTCGGCAGTTACTAATCCCCCAGAATAATCTTCAGTACAAACAGAGCGGCGACCACCACCACGCACAGGTTCAGATCGCGCCAGCGCCCGGTGCATACTTTCATGATGCAg < 1:82681/239‑1 (MQ=255) agaCGGCGAATCGCTTTTCTGGCCCCGGATGTCAGCACCCGAAAACCAACCACAAACACTACCGCCAGCGTGGCGAGCATTATCCAGATCATGAGTTCTCCTGCGTAATCAGAACTCATGATATCTGGAAACCCTCGTCAGTTACTAATCCACCAGAATAATCTTCAGTGCAAACAGAGCTGCGACCACCACCACACACAGGTTCAGATCGCGCCAGCGCCCTGTGCACACTTTCATGATGCAGTACGACa < 1:423701/251‑1 (MQ=255) gAATCGCTTTTCTGGCCCCGGATGTCAGCACCCGAAAACCAACCACAAACACTACCGCCAGCGTGGCGAGCATTATCCAGATCATGAGTTCTCCTGCGTAATCAGAACTCATGATATCTGGAAACCCTCGTCAGTTACTAATccac < 1:203277/146‑1 (MQ=255) gccAGCACCCAAAAACCAACCAAAAACACTACCGCCAGCGTGGCGAGCATTATCCAGATCATGAGTTCTCCTGCGTAATCAGAACTCATGATATCTGGAAACCCTCGTCAGTTACTAATCCACCAGAATAATCTTCAGTGCAAACAGAGCTGCGACCACCACCACACACAGGTTCAGAGCGCGCCAGCGCCCGGTGCATACTTTCATGATGCAGTACGACATAAAGCCGAGTGCAATCACTTCGGTGATc < 1:84023/248‑1 (MQ=255) gTCAGCACCCGAAAACCAACCACAAACACTACCGCCAGCGTGGCGAGCATTCTCCAGATCATGAGTTCTCCTGCGTAATCAGAACTCATGATATCTGGAAACCCTCGTCAGTTACTAATCCACCAGAATAATCTTCAGTGCAAACAGAGCTGCGACCACCACCACACACAGGTTCAGATCGCGCCAGCGCCCGGTGCATACTTTCATGATGCAGTACGACATAAAGCCGAGTGCAATCCCTTCGGTGATCg > 1:152199/1‑251 (MQ=255) gCACCCGAAAACCAACCACAAACACTACCGCCAGCGTGGCGAGCATTATCCAGATCATGAGTTCTCCTGCGTAATCAGCACTCATGATATCTGGAAACCCTCGTCAGTTACTaa > 1:15648/1‑114 (MQ=255) cACCCGAAAACCAACCACAAACACTACCGCCAGCGTGGCGAGCATTATCCAGATCATGAGTTCTCCTGCGTAATCAGAACTCCTGATATCTGGAAACCCTCGTCAGTTACTAATCCACCAGCATAATCTTCAGTGCAAACAGAGCTGCGACCACCACCACACACAGGTTCAGATCGCGCCAGCGCCCGGTGCATACTTTCATGATGCAGTACGACATAAAGCCGAGTGCAATCCCTTCGGTGATc > 1:242768/1‑245 (MQ=255) aCCCGAAAACCAACCACAAACACTACCGCCAGCGTGGCGAGCATTATCCAGATCATGAGTTCTCCTGCGTAATCAGAACTCATGATATCTGGAAACCCTCGTCAGTTACTAATCCACCAGAATAATCTTCAGTGCAAACAGAGCTGCGACCACCACCACACACAGGTTCAGATCGCGCCAGCGCCCGGTGCATACTTTCATGATGCAGTACGACATAAAGCCGAGt > 1:383996/1‑226 (MQ=255) cccGAAAACCAACCACAAACACTACCGCCAGCGTGGCGAGCATTATCCAGATCATGAGTTCTCCTGCGTAATCAGAACTCATGATATCTGGAAACCCTCGTCAGTTACTAATCCACCAGAATAATCTTCAGTGCAAACAGAGCTGCGACCACCACCACACACAGGTTCAGATCGCGCCAGCGCCCGGTGCATACTTTCATGATGCAGTACGACATAAAGCCGAGTGCAATCCCTTCGGTGATCGAGAAAGt > 1:281405/1‑251 (MQ=255) cGAAAACCAACCACAAACACTACCGCCAGCGTGGCGAGCATTATCCAGATCATGAGTTCTCCTGCGTAATCAGAACTCATGATATCTGGAAACCCTCGTCAGTTACTAATCCACCAGAATAATCTTCAGTGCAAACAGAGCTGCGACCACCACcacacaca > 1:400005/1‑161 (MQ=255) nacacTACCGCCAGCGTGGCGAGCATTATCCAGATCATGAGTTCTCCTGCGTAATCAGAACTCATGATATCTGGCAACCCTCGTCAGTTACTAATCCACCAGAATAATCTTCAGTGCAAACAGAGCTGCGACCACCACCCCACACAGGTTCAGATCGCGCCAGCGCCCGGTGCATACTTTCATGATGCAGTACGACATAAAGCCGAGTGCAATCCCTTCGGTGATCGAGAAAGTAAAGGGCATCATCACCg > 1:146954/2‑251 (MQ=255) | ACCAGCTGACTTTCCCATTTGATCGACCATCGACTCCACGGGTACGACATCGATGTT‑CAGCCGATCGCTGAGACGGCGAATCGCTTTTCTGGCCCCGGATGTCAGCACCCGAAAACCAACCACAAACACTACCGCCAGCGTGGCGAGCATTATCCAGATCATGAGTTCTCCTGCGTAATCAGAACTCATGATATCTGGAAACCCTCGCCAGTTACTAATCCACCAGAATAATCTTCAGTGCAAACAGAGCTGCGACCACCACCACACACAGGTTCAGATCGCGCCAGCGCCCGGTGCATACTTTCATGATGCAGTACGACATAAAGCCGAGTGCAATCCCTTCGGTGATCGAGAAAGTAAAGGGCATCATCACCG > NC_000913/3842241‑3842615 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |