New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2288919 =	NA (NA)	24 (1.240)	21/278	0.0	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	= 4287448	0 (0.000)					intergenic (‑77/‑163)	acs/ytcB	acetyl‑CoA synthetase (AMP‑forming)/protein YtcB

GAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATG  >  NC_000913/4287258‑4287684                                                                                                                                                                                               |                                                                                                                                                                                                                                             gAAGGTATCAGGTACGTTACTAGATTGTTGATACATCGCCTCGAACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGggaaggtgcgaataagcggggaacttcttctcggctgactcagtcatttcatttcttcat                                                                                                                                                                                  <  1:9287‑M2/251‑61 (MQ=255)     gTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttt                                                                                                                                                                              >  1:175192‑M2/1‑187 (MQ=255)      tATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGCTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGggaaggggcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttg                                                                                                                                                                             <  1:231420‑M2/251‑66 (MQ=255)          aGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGggaaggtgcgaataagcggggaaattcttctcggctgagtcagtcatttcatttcttcatgtttgagcc                                                                                                                                                                         >  1:403212‑M2/1‑182 (MQ=255)          aGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGGTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGggaaggtgcgaataagcggggaaattcttctcggn                                                                                                                                                                                                           >  1:320383‑M2/1‑182 (MQ=255)                                          cGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttc                                                                                                                                                                                            >  1:352701‑M2/1‑150 (MQ=255)                                                gctgAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGATCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc                                                                                                                                                                          <  1:188149‑M2/212‑69 (MQ=255)                                                      ggTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGCATATGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGggaaggtgcgaataagcggggcaattcttctctgctg                                                                                                                                                                                                         <  1:335106‑M2/175‑38 (MQ=255)                                                       gTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttg                                                                                                                                                                             >  1:426831‑M2/1‑137 (MQ=255)                                                                               gTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatn                                                                                                    >  1:123892‑M2/1‑113 (MQ=255)                                                                                           ngtgtgttTGTGAATTTGGCTCATGCTTTTGCTCTCATTGTAGGATGTTCATACTATGTGGCATACGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagttttt                                                                                          <  1:44038‑M2/248‑149 (MQ=255)                                                                                                gtTTGTGAATTTGGCACATGCTTGTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTAGTGGTAGTTTTGTTTAGggaaggtgcgaataagcgcggaaattcttcgcggctgactcagtcatttcatttcttcatgtttgagc                                                                                                                                                                          >  1:495359‑M2/1‑96 (MQ=255)                                                                                                             gCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcag                                                                                                                                                                                                   <  1:327839‑M2/126‑44 (MQ=255)                                                                                                                 aTGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGgg                                                                                                                                                                                                                                            >  1:144612‑M2/1‑79 (MQ=255)                                                                                                                                  gTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccg                                                  >  1:239417‑M2/1‑62 (MQ=255)                                                                                                                                     ggATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGggaaggtgcgaataagcggggcaattcttctcggctgactaagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgttt                                                                                                                          <  1:76966‑M2/175‑117 (MQ=255)                                                                                                                                                   tgtgGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTANg                                                                                                                                                                                                                                             >  1:394316‑M2/1‑45 (MQ=255)                                                                                                                                                                         ggggTATTGGCAGTTTTGTTTAGggaatgtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatc                                                                                                                                            >  1:156518‑M2/1‑23 (MQ=255)                                                                                                                                                                         ggggTATTGGCAGTTTTGTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattgtttctcccgtaaatgccttgaatcagcctagttagaccgtttcttctccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttgg                                       >  1:475515‑M2/1‑23 (MQ=255)                                                                                                                                                                           ggTATTGGCAGTTTTGTTTAGggaaggtgcgaataagcggggaaattcttcgcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcatcctatttagaccgtttcttcgccatttaaggcgttatccccagttgttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatcgccagttggttatc        >  1:357584‑M2/1‑21 (MQ=255)                                                                                                                                                                                 ggCAGTTTTGTTTAGggaaggtgcgaataagcggggaaattcttctcggctgtcccagtcctttaatttcttcatgtttgagccgattttttctcccgtaactgccttgaatcaccctatttcggccatttcttcgccatttaaggcgttatccccagtttttagtgagctctttcccactgacgtatcatttggtccgcccgacacaggttggccagcgtgaataacatcgccagttggttatcgttttt  <  1:234257‑M2/251‑237 (MQ=255)                                                                                                                                                                                     gTTTTGTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagac                                                                                                                               >  1:34801‑M2/1‑11 (MQ=255)                                                                                                                                                                                     gTTTTGTTTAGggaaggtgcgaataagcggggaaattcttcgcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcatcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttgggccgcccgaaacaggttggc                                      >  1:329533‑M2/1‑11 (MQ=255)                                                                                                                                                                                          gTTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatatttgagccgattttttctcccgtaaatgccgtgaatcatcctagttagaccttttcttcgccatttaaggcgttatcccctgttgttagtgagatcactgccactgtcgtatcatttggtccgcccgaaacaggttggccagcgtgaa                             >  1:491225‑M2/1‑6 (MQ=255)                                                                                                                                                                                               |                                                                                                                                                                                                                                             GAAGGTATCAGGTACGTTAATAGATTGTTGATACATCGCCTCGTACTGCTGAGGGTTTATCAGGCAACGGTCTGCGATGTTGGCAGGAATGGTGTGTTTGTGAATTTGGCTCATGCTTTTGTTCTCCTTGTAGGATGTTAATAATATGTGGCATAAGCGTTAAATGTAGGGGTATTGGCAGTTTTGTTTAGTATTTGGGCGACAGATCACGCAAAAGTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAGGTCAGCAACAAAAGTTGATTAATTCTTTGAGGAACATGCAGTTATGCATGCTGTTGAAAAAGAGGAAGATACTGACTAACTCTAAAGTGGTATTTTACATGCACTTACAATTGATTAAAGACAACATTCACAGTGTGGTTATTTGTTACACATAGGGGCGAGCAATGTCATG  >  NC_000913/4287258‑4287684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.