New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2288919 =	NA (NA)	24 (1.240)	21/278	0.0	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	= 4287448	0 (0.000)					intergenic (‑77/‑163)	acs/ytcB	acetyl‑CoA synthetase (AMP‑forming)/protein YtcB

GATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGC  >  NC_000913/2288735‑2289158                                                                                                                                                                                          |                                                                                                                                                                                                                                                gattaccTCCGTTAAGTTCATTATTATTACTTACACCAAATTCGTTTATAGGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCAGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCA‑ATGATATGGGTGAATATAAGGAAGGTGCGAAGAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTGCATTTCTTCATGTTTGAg                                                                                                                                                                               <  1:320787/246‑1 (MQ=38)                                   acCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGtttn                                                                                                                                                                                 <  1:297405/215‑2 (MQ=255)                                    ccAAATTCGTTTATATGCTGTTCTCCGCCAGGATTGAGTTTCGTAGTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCATCGGTCGCACCATACTCAACAGTTGATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCgggg                                                                                                                                                                                                                             <  1:459483/170‑1 (MQ=255)                                       aaTTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCATGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGGCATTTCATTTCTGCATGTTTGAGc                                                                                                                                                                              <  1:423658/214‑1 (MQ=255)                                                            ccGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAAACAGCTGGATATATTTTTCCAGGACCACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGGATAAGCGGGGAAATTCTTCTCGGCTGACTCCGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAtt                                                                                                                    >  1:272774/1‑251 (MQ=255)                                                              gCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTa                                                                                                                  <  1:11275/251‑1 (MQ=255)                                                               ccAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGGCAACAACATTCACTGTCCCACCAAACTCAACAGTTGATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa                                                                                                                                                                                                        >  1:427509/1‑164 (MQ=38)                                                                     ttgattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGTTGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGcn                                                                                                                                                                                                                                        <  1:95448/126‑2 (MQ=255)                                                                              gTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttcttc                                                                                                                                                                                                                    <  1:288105/137‑1 (MQ=255)                                                                                              cATAAACCAGCTGGATATCTTTTTCCAGGACAACACCAGCAACTGTCTCACCATACGCAACAGTTGATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc                                                                                                                                                                    <  1:88762/169‑1 (MQ=255)                                                                                                                        aGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGc                                                                                                                                                                              >  1:31092/1‑133 (MQ=255)                                                                                                                         ngACAACACCATCAACTGTCTCACCATACTCAACAGTTCATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                                                                                                                             >  1:103099/2‑165 (MQ=255)                                                                                                                             aacaCCATCAACTGTCTCACCATACTCAACAGTTGAT‑CCACATGCTATGGGTGAATATAAGGACGGTGAGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGCGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTATTCGCCATTTAAGGCGTTATCCACAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGaa                                                    >  1:331927/1‑250 (MQ=17)                                                                                                                                 ccATCAACTGTCTCACCATACTCACCAGTTGATGCCA‑ATGCTATGGGTGAATATCAGGAAGGTGCGAATACGCGGGGAAAt                                                                                                                                                                                                                         >  1:71281/1‑81 (MQ=255)                                                                                                                                   aTCAACTGTCTCACCATACTCAACAGGTGATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCg                                                                                                                                                                            <  1:191236/124‑1 (MQ=255)                                                                                                                                          ttctcACCATACTCAACAGTTGATGCCA‑ATGCTCTGGGTGAATATAAGGAAGGTGCGGATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGc                                      >  1:390685/2‑251 (MQ=255)                                                                                                                                          nnctcACCNNACTCAACAGTTGATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca                                                                                                                                                                                               <  2:8779/96‑1 (MQ=255)                                                                                                                                                      tCAACAGTTGATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAGTCTTCGCGGCTGACTCAGTCATTTCATGTCGTCATGTTGGAGCCGATGTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGAtctc                                                                                   <  1:360279/194‑1 (MQ=17)                                                                                                                                                        aaCAGTTGATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTGTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGc                        <  1:87822/251‑1 (MQ=255)                                                                                                                                                          cAGTTGATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCAttt                                                                >  1:27350/1‑209 (MQ=255)                                                                                                                                                            gTTGATGCCA‑ATTCTATGGGTGAATATAAGGAAGGTg                                                                                                                                                                                                                                          <  1:164188/37‑1 (MQ=255)                                                                                                                                                                   ccA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGcc                                                                                                                                                                             >  1:252142/1‑91 (MQ=255)                                                                                                                                                                   ccA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTAt             >  1:80374/1‑251 (MQ=38)                                                                                                                                                                    cA‑ATGCTATGGGTGAATATAAGAAAGGTGCGAATAAGCGGGGAAATTCTTCTCTGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACATGTTGGCCAGCGTGAATAAc                             <  1:422537/234‑1 (MQ=255)                                                                                                                                                                       aTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGcc                                                                                                                                                       <  1:241814/110‑1 (MQ=255)                                                                                                                                                                               ggTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCAGTAACTGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCAATTTAAGGCGTTATCCCCAGTTTTTAGTGCGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGc  >  1:320612/1‑251 (MQ=16)                                                                                                                                                                                gTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGc  >  1:86191/1‑250 (MQ=32)                                                                                                                                                                                  gaagataATGAAGGTGCGAATAATCGGGAAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGcc                                                                                                                                                                             <  1:249008/73‑1 (MQ=11)                                                                                                                                                                                      ataATGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTc                                                                                                                                                                                                         <  1:489612/45‑1 (MQ=255)                                                                                                                                                                                          |                                                                                                                                                                                                                                                GATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCA‑ATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGC  >  NC_000913/2288735‑2289158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.