| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 23 (1.190) | 19/278 | 0.0 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 4312943 = | 0 (0.000) | coding (49/891 nt) | alsR | DNA‑binding transcriptional repressor AlsR | |||||
CAACTCGGAAGGCAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCGACATCTTTAATTGCGGGTGCACAACTCAGGTTACCGGGTTTGAGTAACCACTCCACGATGCGGCTTTCATTTTCTGTCATTCCTTCCTGCTTCATTCGCAGGTAAGGCGCTAACCCTATACCGTTCGGAAGCGCTGAATCAAACTCTGACTGGCTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAA‑CAATGGCGAGTGGCTTAAAATTTTATTTCATTTAATTAGTTTAAAAACATGATGTTATTTGTTTTTC > NC_000913/4312698‑4313171 | ggtttccagcggataaggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgatccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAAc < 1:199862‑M2/5‑1 (MQ=255) attaccagccttggggtaaaacggctcgatgacttccaccctgttttgaactcgcagtatctgctcaatccgggacaagaacatctcttttctggtatgacggcgcttaatgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACCCTATACCGTTCg > 1:232401‑M2/219‑236 (MQ=255) gctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACCCTATACCGTTCGGAAGCGCTGAATCAAACTCTGAc < 1:110922‑M2/41‑1 (MQ=255) ctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttacagctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACCCTATACCGTTCGGAAGCGCTGACTCAAACTCTGACTGGCTCATCACGTtct > 1:456176‑M2/195‑251 (MQ=255) nncnncgnnnncnnnnnnnngcnnnggcagantnngctccntgcnggacaagaaaatctcgtttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgaatcatgatgaaccctgttctatggctccagatnacanacatnttntcatgtcagggacttnttcgcaccttccCTACCCCTATACCGTTCGGAAGCGCTGAATCANNCNNNGNCGGGCtca < 2:351796‑M2/48‑1 (MQ=255) ncatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACCCTATACCGTTCGGAAGCGCTGAATCAAACTCTGCCTGGCTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCa > 1:103727‑M2/154‑250 (MQ=255) gaaaatctcttttctggtctgacggcncttactnntgnattcactgtcggcgaaggtnagnnnannncncctganganncctgttctanggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTNACCCTATACNNTTCGGAAg > 2:117384‑M2/141‑162 (MQ=255) gaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACCCTATACCGTTCGGAAg < 1:117384‑M2/22‑1 (MQ=255) gaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACCCTATACCGTTCGGAAGCGCTGAATCAAACTCTGACTGGc < 1:8481‑M2/45‑1 (MQ=255) tactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttcgtctcgccgtccCTAACCCTATACCGTTCGGAAGCGCTGAATCAAACTCTGACTGGCTCATCACGt < 1:225391‑M2/54‑1 (MQ=255) attcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcagatcaggtacttgttcgcaccttccCTAACCCTATACCGTTCGGAATCGCTGAATCAAACTCTTACTGGCTCATCACGTTCTCTTGTCCTTTAATTGAAGGCTCCACTATATCACCACGGCAAGAACAGAAAAGATGCTGGc < 1:196338‑M2/117‑1 (MQ=255) gaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaatcatcatctcatatccgggacttgttcgcaccttccCTAACCCTCTACCGTTCGGAAGCGCTGAATCAAACTCTGCCTGGTTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCCCCACAGCAAGAACAGAAAAGATGCTGGCGAc > 1:478203‑M2/90‑209 (MQ=255) gaaccctgttctatggctccagatgacacacatgatctcatatcagggacttgttcgcaccttccCTAACCCTATACCGTTCGGAAGCGCTGAATCAAACTCTGACTGGCTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCAC‑AAAAAATAAAATTTTTTAAGTTTTTTTtattgttaaccaatggcagaatcggagggcacc > 1:267154‑M2/66‑234 (MQ=255) cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACCCTATACCGTTCGGAAGCGCTGAATCAAACTCTGACTGGCTCATCACGTTCTCTTGTCATTGAATTGAAGACGCCACTCTATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAA‑CAATGGCGAGTGGCTTAAAATTTTAttt > 1:78799‑M2/62‑251 (MQ=255) ccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACCCTATACCGTTCGGAAGCGCGGAATCAAACTCTGACTGGCTCATCACGTTCGCTTTGCCGTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACAAAAAAAGAAAATTTATAAATTTGATTTTATTGTGAA‑CAATGGCGAGTGGTTTAAAATTTTATTTCATTTAATTAGt < 1:240237‑M2/202‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttctcaccttccCTAACCCTATACCGTGCGGAAGCGCTGAAGCATACTCTGTCTGTCGCATCACGTTCTCTTGGCCTTGAATTGAAGACTCCACTATGTGTCCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACaa < 1:438787‑M2/127‑1 (MQ=255) naaacatgatctcatatcagggacttgttcgcaccttccCTAACCCTATACCGTTCGGAAGCGCTGAATCACACTCTGACTGGCTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCa > 1:121897‑M2/40‑120 (MQ=255) gatctcatatcagggacttgttcgcaccttccCTAACCCTATACCGTTCGGAAGCGCTGAATCAAACTCTGACTGGCTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAA‑CAATGGCGAGTGGc < 1:193812‑M2/176‑1 (MQ=255) nctcatatcagggacttgttcgcaccttccCTAACCCTATACCGTTCGGAAGCGCTGAATCAAAATCTGACTGGCTCATAACGTTCTCTTGACCTTGAATTGAAGACGCCAATATATCACCACAGCAAGAAAAGAAAAGATGCTGGCGACTTCACAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAA‑CAATGGCGAGTGGCTTAAAATTTTATTTCATTTAATTAGTTTAAAAACATGATGTTAtt > 1:48873‑M2/31‑251 (MQ=255) cagggacttgttagcaccgtccCTAACCCTATACCGATCGGAAGCGCTGAATCAAACTCTGACTGGCTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTGCACAAAAAAAAAAAAATTATAAAGGTTATTGTATTTTGAA‑CAATTGCGAGTTTTTTAAAAGTTTATTGCATTTAATTAGATTAAAAACATGATGTTATTTGTTTTTc < 1:359256‑M2/229‑1 (MQ=255) tcgcaccttccCTAACCCTATACCGTTCGGAAGCGCTGAATCAAACTCTGACTGGCTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATca < 2:311543‑M2/89‑1 (MQ=255) ncgcaccttccCTAACCCTATACCGTTCGGAAGCGCTGAATCAAACTCTGACTGGCTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATca > 1:311543‑M2/12‑100 (MQ=255) ccCTAACCCTATACCGTTCGGAAGCGCTGAATCAAACTCTGACTGCCTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACaaaaaantaannn > 2:306189‑M2/3‑137 (MQ=255) cTAACCCTATACCGTTCGGAAGCGCTGAATCAAACTCTGACTGGCTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCGACTATATCACCACAGCAATAACAGAAAAGATGCTTGCGACTTCACAAAAAAATAAGATTGATAAAGTGTATTTTATTGTGAA‑CAATGGCGAGTGGCTTAAAATTTTAt < 1:236126/188‑1 (MQ=255) | CAACTCGGAAGGCAATACCTGTTCTGACTGAGAAAAATAATCTTCCAGCGCACTGCGTAAGTTACGAAAGCCGCTAAACCCCAGCAGCTTTGATACCTTAACTATCATCGCTTCAGATACCGCCAGAGCTTCTGCGACATCTTTAATTGCGGGTGCACAACTCAGGTTACCGGGTTTGAGTAACCACTCCACGATGCGGCTTTCATTTTCTGTCATTCCTTCCTGCTTCATTCGCAGGTAAGGCGCTAACCCTATACCGTTCGGAAGCGCTGAATCAAACTCTGACTGGCTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAA‑CAATGGCGAGTGGCTTAAAATTTTATTTCATTTAATTAGTTTAAAAACATGATGTTATTTGTTTTTC > NC_000913/4312698‑4313171 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |