Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 3,032,624 | C→T | L420L (CTG→TTG) | uacT → | urate:H(+) symporter |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,032,624 | 0 | C | T | 93.3% | 36.1 / NA | 15 | L420L (CTG→TTG) | uacT | urate:H(+) symporter |
Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (6/8); minor base G (0/1); total (6/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01 |
CATGGTGCCAAAAATGGCGGTGCTGGTAGCCTCCATTCCGCAATTTGTGCTGGGCGGCGCTGGTCTAGTGATGTTCGGCATGGTACTGGCGACAGGGATTCGAATTCTGTCGCGCTGTAACTACACCACCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTCCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCGCTGCTACATAGCGGCATTATGCTCGCAACCCTTAGCGCCGTTGTGCTGAACGTCTTCTTTAATGGCTATCAGCATCATGCTGACCTGGTGAAGGAATCCGTCTCTGATAAAGATTTAAAAGTCAGGACAGTACGTATGTGGCTTCTGATGCGCAAGCTGAAGAAA > NC_000913/3032401‑3032797 | cATGGTGCCAAAAATGGCGGTGCTGGTAGCCTCCATTCCCCAATTTGTGCTAGGTGCCGCTGGCCTACTGATGTTCGGCATGGAACACACGAAAGGGATTCGGCTTCTGTCGCGCTGTAACTACACCCCCAACCGTTACAACACCTATATTGTGGCGATCAGTCTCGGCGGTGGCATGACTCCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTATTGCAACCGCTGCTACATAGCggggatc > 1:76679/1‑246 (MQ=255) ccAAAAATGGCGGTGCGGGTAGCCACCATTCCGCAATTTGTGCGGGGCGGCGCTGGTCTAGTGATGTTCGGCATGGTACAGGCGACAGGGATTCGAATTCGGTCGCGCTGTAACTACACCACCAACCGTTACAACCTCTATATTGTGGCTATCAGTCGCTGTGTTGGCATGACTCCGACGCTCTCTCACGATTTCTTGTCTAAGTTACCGGCCGTATTGCAACCGCTGCTACATAGCGGCATTATGCTCGc < 1:380039/251‑1 (MQ=255) ggTGCTGGTAGCCTCCATTCCGCAATTTGTGCTGGGCGGCGCTGGTCTAGTGATGTTCGGCATGGTACTGGCGACAGGGATTCGAATTCTGTCGCGCTGTAACTACACCACCAACCGTTACAACCTCTATATTGGGGCGATCAGTCTCGGCGTTGGCATGACTCCGACGCTCTCTCACTATTTCTTTTCTAAGTTACCGGCCGTATTGCAACCGCTGCTACATAGCGGc < 1:197564/229‑1 (MQ=255) gCTGGGCGGCGCTGGTCTAGTGATGTTCGGCATGGTACTGGCGACAGGGATTCGAATTCTGTCGCGCTGTAACTACACCACCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTCCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTATTGCAACCGCTGCTACATAGCgn < 1:310770/198‑2 (MQ=255) ntACTGGCGACAGGGATTCGAATTCTGTCGCGCTGTAACAACACCACCACCCGGTACAACCTCTAAATTGTGGCGCTCAGTCTCCGCGTTGGCATGACTCCGACGCTCTCTCCCGCTTTCTTTTCTAAGTTACCGGCCGTATTGCAACCGCTGCTACATAGCGGCATTATGCTCGCAACCCTTCGCGCCGTTGTGc > 1:53253/2‑196 (MQ=255) gTAACTACACCACCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTCCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTATTGCAACCg < 1:217031/116‑1 (MQ=255) ccaACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTACGACGCTCTCTCACGATTTCTTTTATAAGTTACCGGCCGTATTGCACCCGCTGCTACATAGCGACATTATGCTCGCAACCCTTAGCGCAGTTGTGCTGAACGTCTTCTTTCATGGCTATCAGCATCATGCTGACCTGGTGAAGGAATCCGTCTCTGATACAGATTTAAAAGTCAGAACAGTACGTATGTGGCTTCTg > 1:226337/1‑251 (MQ=255) ccGTTACAACCTCTATCTTGTGGCGATCAGTCTCGGCGTTGGCATGACTCCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTATTGCAACCGCTGCTACATAGCGGCATTATGCTCGCAACCCTTAGCGCCGTTGTGCTgga > 1:262776/1‑148 (MQ=255) ccGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTCCGACGCTCTCTCACGATTTCTTTTCTAATTTACCTGCCGTATTGCAACCGCTGCTACATAGCGGCATTATGCTCGCAACCCTTAGCGCCGTTGTGCTGAACGTCTTCGTTAATGTCTATCAGCATCATTCGGACCTGGTGAAGGAATCCGTCTCTGATAAAGATTTAAAAGTCAGGACAGTACGTATGTGGCTTCTGATgc < 1:458564/251‑1 (MQ=255) tCAGTCTCGGCGTTGGCATGACTCCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTATTGCAACCGCTGCTACATAGCGGCATTATGCTCGCAACCCTTAGCGCCGTtgtn < 1:147812/119‑2 (MQ=255) ctcGGCGTTGGCATGACTCCGACGCTNTCTCACNNTTNCTTTTCTAAGTTACCGGCCNTANNNCNNNCNCTGCTNCANNGCGGCATTANGCTCGCAACCCTTAGCGCCGTTGTGCTGAACg > 2:118519/1‑121 (MQ=255) ctcGGCGTTGGCATGACTCCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTATTGCAACCGCTGCTACATAGCGGCATTATGCTCGCAACCCTTAGCGCCGTTGTGCTGAACg < 1:118519/121‑1 (MQ=255) cACGATTTCTTTTCTAAGTTACCGTCCGTATTGCAACCGCTGCTACATAGCGGCATTATGCTCGCAACCCTTAGCGCCGTTGTGCTGTACGTCTTCTTTAATGGCTATCAGCATCATGCTTACCTGGTGAAGGAATCCGTCTCTGATAACGCTTTAAAAGTCAGGACACGACGTATGTGGCTTCTGATGCGCAAGCTGAAGaaa > 1:11498/1‑204 (MQ=255) aTTTCTTTTCTAAGTTACCGGCCGTATTGCAACCGCTGCTACATAGCGGCATTATGCTCGCAACCCTTAGCGCCGTTGTGCTGAACGTCTTCTTTAATGGCTATCAGCATCATGCTGACCTGGTCAAGGAATCCGTCTCTGATAAAGATTTAAAAGTCAGGACAGTACGTATGTGGc < 1:237072/177‑1 (MQ=255) aaggtACCGGCCGTAGGGCAACCGCTGCTACATAGCGGCATTAGGCTCGCAACCCGTAGCGCCGTTGTGCTGAACGTCTTCTTTAATGGCTATCAGCATCATGc < 1:167799/100‑1 (MQ=255) ccGGCCGTATTGCAACCGCTGCTACATAGCGGCATTATGCTCGCAACCCTTAGCGCCGTTGTGCTGAACGTCTTCTTTAATGGCTATCAGCATCATGCTGACCTGGTGAAGGAATCCGTCTCTGATAAAGATTNAAANNNNNggnn > 2:307702/1‑144 (MQ=255) | CATGGTGCCAAAAATGGCGGTGCTGGTAGCCTCCATTCCGCAATTTGTGCTGGGCGGCGCTGGTCTAGTGATGTTCGGCATGGTACTGGCGACAGGGATTCGAATTCTGTCGCGCTGTAACTACACCACCAACCGTTACAACCTCTATATTGTGGCGATCAGTCTCGGCGTTGGCATGACTCCGACGCTCTCTCACGATTTCTTTTCTAAGTTACCGGCCGTACTGCAACCGCTGCTACATAGCGGCATTATGCTCGCAACCCTTAGCGCCGTTGTGCTGAACGTCTTCTTTAATGGCTATCAGCATCATGCTGACCTGGTGAAGGAATCCGTCTCTGATAAAGATTTAAAAGTCAGGACAGTACGTATGTGGCTTCTGATGCGCAAGCTGAAGAAA > NC_000913/3032401‑3032797 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |