New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1299499 =NA (NA)14 (0.790) 12/254 0.2 100% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 1300694 = 0 (0.000)intergenic (+147/‑488) insH21/oppA IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

GATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGG  >  NC_000913/1299376‑1299718
                                                                                                                           |                                                                                                                                                                                                                           
gATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTaag                                                                                                                                                                                                                             <  1:15006/124‑1 (MQ=255)
                                                                       taatTNAAATGNTNNTATTAATTCCCCCGCCTTTNGTAGAGGAAAGTGCTNAGGANGGCGCNa                                                                                                                                                                                                                   >  2:209996/1‑63 (MQ=255)
                                                                                            gactggtcaggtcaatgccccccaatGCTAAGGAAGGTGCGAACAAGACCCTGATATGAGATCATGTTTGTCATCTGTAGCCTTACGACAGGGTTCAGCATGAGTTATAAACTTATCGTCGGCGACAGTGAATACAGCAGTAATCGCCGTCAGATGAGAAAATAGATTTGCCTGTGCCCCAGTTATGAGGTGCTTGCATCGGAAAACATGGTGGAAGTCATCGAGCCGTTGTACCCCAAGGTTGGTAATgg  <  1:275268/226‑1 (MQ=2)
                                                                                                                           |                                                                                                                                                                                                                           
GATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGG  >  NC_000913/1299376‑1299718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.