| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,919,941 | C→T | A155T (GCG→ACG) | atpH ← | ATP synthase F1 complex subunit delta |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,919,941 | 0 | C | T | 94.7% | 50.1 / ‑4.4 | 20 | A155T (GCG→ACG) | atpH | ATP synthase F1 complex subunit delta |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (10/8); total (11/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
CAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCAGTTCGCTGATTTCGGTGGAATTCAGTTGCATGCTCCAGTCCCCTTAAGACTGCAAGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGTTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCGGGAGCGCGTTAAGACGACCATTTTCAGCCAT > NC_000913/3919718‑3920166 | cAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTCCAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCAGTTCGCTGATTTCGGTGGACTTCAGTTGCATGCTCCAGTCCCCTTAAGACTGCAAGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGTTCGgatga > 1:348818/1‑232 (MQ=255) gTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCAGTTCGCTGATTTCGGAGGAATTCAGTTGCATGCTCCAGTCCCCTTAAGACTGCAAGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGTTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGc > 1:71240/1‑251 (MQ=255) cGGATAACACCATCACTTACAGAAACAATGGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCAGTTCGCTGATTTCGGTGGAATTCAGTTGCATGCTCCAGTCCCCTTCAGACTGCAAGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGTTCGGATGATAACGc > 1:152470/1‑217 (MQ=255) cTTACAGAAACAATAGTACCTTCGTTGGGAGCTTCACTCACGACATTGAACTGAGCCATGCACTGCTTGATCAGTGCGCTGATTTCGGCGGACTTCAGTGGCATGCTCACGTCCCCTTAAGACTGCAAGACGTCTACCAGGCGCTCCAGACGACCGCGTACGCTACCATCAATGACCATATCACCCGCTCGGATGATAACACCTGCCATTACAGACTTATCGATTTTg > 1:456659/1‑228 (MQ=255) caacaTTGAACTGAGCAATGCGCTGCTTGATCAGTTCGCTGATTTCGGTGGAATTCAGTTGCATGCTCCAGTCCC‑TTAAGACTGCAAGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGTTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACGTTGCGTGACATACGTTTTTCCATCGCAGCAGAAATTTTCGCGAGCtgtt < 1:228627/251‑1 (MQ=255) gAGCAATGCGCTTCTTGATCAGTTCGCTGATGTCGGGTGAATTCAGTTGCATGCTCCAGTCTCCTTAAGACTGCAAGACGTCTGCAAGGCGCTCAATACGACCGCGTACGCTGCCATCAATGACCATATCACCGGGTCGGATGAGAACGTCTTCCATTACAGACGGATCGATTTTGCTATGCAGCTTTTCTGGGCTTGACAGACTGTTTTCCATCGCAGCATAAATTTTCGCGAGCTGTTGTTCAc < 1:470788/246‑1 (MQ=255) cAATGCGCTGCTTGATCAGTTCGCTGATTTCGGTGGAATTCAGTTTCATGCTCCAGTCCCCTTAAGACGGCAAGACTGCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCGATCAATGACCATAGCACCCGTTCGGATGATAACGCCTGCCATTACAGACTTATc < 1:256395/166‑1 (MQ=255) ctTGATCAGTTCGCTGATTTCGGTGGAATTCAGTTGCATGCTCCAGTCCCCTTAAGACTGCAAGACCTCTGCAAGGCGATCACGACGACCGCGTACGCTGCCCTCAATGACCATATCACCCGTTCGGATGATAACGCCTGCCATTACCGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGTTTTTCCATCGCAGCAGAACTTTTCGCGAGCtgttg > 1:355772/1‑228 (MQ=255) ctgttttCGGTGGAATTCAGTTGCATGCTCCTGTCCCCGTAAGACTGCAAGACGTCTGCAAGGCGCTCAAGTCGACCGCGTACGCTGCCATCAATGACCATATCACCCGTTCGTATGATAACGTCTGCCATTACAGACTTAGCGATTTTGCAATTCAGCTTAACTTTGCTTGAAAGTCGGGTTTCCATCGCAGCATAAATTTTCGCGAGCTGTTGGTCACTCAGTGCGGCAGCGGAAATGACGTCTAcc < 1:342608/245‑1 (MQ=255) naGTTGCATGCTCCAGTCCCCTTAAGACTGCAAGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGTTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGTTTTTCCATCGCAGCAGaaa > 1:303907/2‑182 (MQ=255) cATGCTCCAGTCCCCTTAAGACTGCAAGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGTTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAAGTCAGCTTAACTTTGCGTGACAGACGTTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAg < 1:477315/201‑1 (MQ=255) ccccTTAAGACTGCAAGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGTTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGATTAACTTTGCGTGACAGACGTTTTTCCATCgcag > 1:359036/1‑159 (MQ=255) ccccTTAAGACGGCAAGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCNCCCNTTCGNATNATAACGCCTGCCATTNCAGACTTATCGATTTTGCAATTCAGATTAACGTTGCGTGACAGANNTNNNTNCATCgcag < 2:359036/159‑1 (MQ=255) ccTTAAGACTGCAAGACGTCTGCACGGCGCTCAAGCCGACCGCGTACGCTGCTATCAATGACCATATCACCCGTTCGGATGATAACGCATGCCATTCCAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGTTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTAAGTGCGGc > 1:416458/1‑194 (MQ=255) cTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGTTCGGATGATAACGCCTGCCATTACAGACTTAGCGATTTTGCAATTCAGCTTAACTTGGCGTGACAGACGTTTTTCCATCGCAGCAGAAATTGTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCAc < 1:22197/219‑1 (MQ=255) ngcgnTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGTTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGTTTTTCCATCGCAGCAGaaa < 2:303907/137‑1 (MQ=255) gcgcTCAAGACGACCGCGTACGCTGCCATCAATGACCATCTAACCCGTTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCCGCTTAAc > 1:435038/1‑102 (MQ=255) cAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGTTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGTTTTTCCATCGCAGCAGAAATTTTCGCGAGCtgttg < 1:32891/148‑1 (MQ=255) ccGCGTACGCTGCCATCAATGACCATATCACCCGTTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGTTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCCGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAACCTGCTCCAGAACATCCGGGAGCGCGTTAAGACGACCAtt > 1:487396/1‑251 (MQ=255) cTGCCATCAATGACCATATCACCCGTTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGTTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCGTGAGCGCGTTAAGACGACCATTTTCAGCCAt > 1:210642/1‑251 (MQ=255) | CAATCGGCCAGGCCGTGAATGCGGATAACACCGTCACTTACAGAAACAATAGTACCTTCGTTGTGAGCTTCACTCACAACATTGAACTGAGCAATGCGCTGCTTGATCAGTTCGCTGATTTCGGTGGAATTCAGTTGCATGCTCCAGTCCCCTTAAGACTGCAAGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGTTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCGGGAGCGCGTTAAGACGACCATTTTCAGCCAT > NC_000913/3919718‑3920166 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |