New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	0 (0.000)	13 (0.670)	9/278	0.6	100%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

ATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAG  >  NC_000913/1979046‑1979501                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                       gccattaccagccttggggtacaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagcaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggcaccagatgacaaacatgctctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACttttgt                                                                                                                                                                                                               <  1:151615‑M1/26‑1 (MQ=255)       accagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGGTTTgng                                                                                                                                                                                                         >  1:395154‑M1/220‑251 (MQ=255)                    taaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtacgttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCt                                                                                                                                                                                            <  1:27734‑M1/45‑1 (MQ=255)                                           catgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgct                                                                                                                                                                     >  1:297142‑M1/184‑251 (MQ=255)                                                                                                  gtctgacggcgcttactgctgaattcnctgtcgnnganggtaagttgatgactcatgntgnnncnnntnctatgnctnnagctgacaancatgatctcatatcagggacttgttcgcaccttccttaaCATAACTGTATACGNCATACTTTTNNTTTGGGTGTATTTCAATCTGTNAAANNGNNTNtcgntan                                                                                                                                                                        <  2:120413‑M1/65‑2 (MQ=255)                                                                                                  gtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAgg                                                                                                                                                >  1:120413‑M1/129‑217 (MQ=255)                                                                                                  gtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgaggactcatgatgaatcctgtgctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGGGTATGTCAATCTGTTAAAAAGTTTTTcgc                                                                                                                                                                           >  1:154615‑M1/129‑190 (MQ=255)                                                                                                                  tgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc                                                                                                                                                                           >  1:28336‑M1/113‑174 (MQ=255)                                                                                                                                 cggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagttgacaaaaatgctctcatctcagggaattgttcgcaccttccttacCCTCAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATATGTTAAAAAGTTTTTcgctac                                                                                                                                                                        <  1:229655‑M1/65‑1 (MQ=255)                                                                                                                                                                   tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgctccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTtgcgn                                                                                                                        >  1:56529‑M1/64‑175 (MQ=255)                                                                                                                                                                           ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCAGTTTCATGCAATACCAGATAAGCTATTTTTAAAcan                                     >  1:315937‑M1/56‑250 (MQ=255)                                                                                                                                                                                 ngatgacnnacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                                                                                                                                                         >  2:27734‑M1/50‑97 (MQ=255)                                                                                                                                                                                                                      naccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACaaag  <  1:93543‑M1/231‑1 (MQ=255)                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                       ATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAG  >  NC_000913/1979046‑1979501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.