| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 202,615 | C→T | S19L (TCA→TTA) | lpxA → | acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 202,615 | 0 | C | T | 100.0% | 16.7 / NA | 7 | S19L (TCA→TTA) | lpxA | acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (3/4); total (3/4) | |||||||||||
GCGGCCTGACCCGTTTTAAAGGGGTTGCTCTGGTCGATGGTAAAGTAGTTTGCGAAGCAACGATGATGTGTGCTCGTAGCCGGGAGGCCTGATACGTGATTGATAAATCCGCCTTTGTG‑CATCCAACCGCCATTGTGGAAGAGGGCGCGTCAATTGGCGCGAACGCACACATTGGTCCTTTTTGTATCGTTGGACCCCATGTCGAAATTGGTGAGGGTACCGTACTGAAATCTCACGTTGTCGTGAATGGTCATACTAAAATTGGCCGCGATAATGAGATTTATCAGTTCGCCTCCATCGGCGAAGTTAACCAGGATCTGAAATATGCTGGCGAACCGACCCGTGTGGAAATCGGCGATCGTAACCGC > NC_000913/202465‑202832 | gcgGCCTGACCCGTTTTAAAGGGGTTGCTCTGGTCGATGGTAAAGTAGTTTGCGAAGCAACGATGATGTGTGCTCGTAGCCGGGAGGCCTGATACGTGATTGATAAATCCGCCTTTGTG‑CATCCAACCGCCATTGTGGAAGAGGGCGCGTTAATTGGCGCGAACGCACACATTGGTCCTTTTTGTATCGTTGGACCCCAGGTCGAAATTGGTg < 1:389598/213‑1 (MQ=255) ggTCGATGGAAAAGTAGGTGGCAAAGCACGGATTATGTGTTCTGGGAGCCGGGGTGCCGGATACGTGATTGATAATTCCACCTT‑GTGGCATCCAACCGCCAGTGTGGAAGAGGGCGCGTTAATTGGCGCGAACGCACACATTGGTCCTTTTTGTAGCGTTGGACCCCAGGTCGAAATTGGTGAGGGTACCGTACTGAAATCTCTCGTTGTCGTGAATGGTCATACTAAAATTGGCCGCGATAATGAGAtt < 1:235253/250‑1 (MQ=255) cGTGATTGATAAATCCGCCTTTGTG‑CATCCAACCGCCATTGTGGAAGAGGGCGCGTTAATTGGCGCGAACGCACACATTGGTCCTTTTTGTATCGTTGGACCCCATGTCGAAATTGGTGAGGGTACCGTACTGAAATCTCACGTTGTCGTGAATGGTCATACTAAAATTGGCCGCGATAATGAGATTTATCAGTTCGCCTCCATCGGCGAAGTTAACCAGGATCTGAAATATGCTGGCGAACCGACCCgtg > 1:453566/1‑251 (MQ=255) tgattgaaAAATCCGCCTTTGTG‑CATCCAACCGCCATTGTGGAAGAGGGCGCGTTAATTGGCGCGAACGCACACATTGGTCCTTTTTGTATCGTTGGACCCCATGTCg < 1:156101/108‑1 (MQ=255) tccgtcttgggg‑CATCAAACCGCCATTGTGTAAGAGGGCGCGTTAATTGGCGCGAACGCACACATTGGTCCTTTTTGTATCGTTGGACCCCATGTCGAAAGTGGTGAGGGTATCTTTCTGAAATCTCACGTTGTCGTGAATGGTCATACTAAAATTGGCCGCGATAATTAGATGTATCAGTTCGCGTCCATCGGCGAAGTTAACCAGGATCTGAAATATGCTGGCGAACCGACCCGTGTGGAAATCGGCg < 1:286081/239‑1 (MQ=255) g‑CATCCAACCGCCATTGTGGAAGAGGGCGCGTTAATTGGCGCGAACGCACACATTGGTCCTTTTTGTATCGTTGGACCCCATGTCGAAATTGGTGAGGGTACCGTACTGAAATCTCACGTTGTCGTGAATGGTCATACTAAAATTGGCCGCGATAATGAGATTTATCAGTTCGCCTCCATCGGCGAAGTTAACCAGGATCTGAAATATGCTGGCGAACCGACCCGTGTGGAAATCGGCGATCGTAACCGc > 1:421450/1‑250 (MQ=255) ggAAGAGGGCGCGTTAATTGGCGCGAACGcac > 1:446085/1‑32 (MQ=255) | GCGGCCTGACCCGTTTTAAAGGGGTTGCTCTGGTCGATGGTAAAGTAGTTTGCGAAGCAACGATGATGTGTGCTCGTAGCCGGGAGGCCTGATACGTGATTGATAAATCCGCCTTTGTG‑CATCCAACCGCCATTGTGGAAGAGGGCGCGTCAATTGGCGCGAACGCACACATTGGTCCTTTTTGTATCGTTGGACCCCATGTCGAAATTGGTGAGGGTACCGTACTGAAATCTCACGTTGTCGTGAATGGTCATACTAAAATTGGCCGCGATAATGAGATTTATCAGTTCGCCTCCATCGGCGAAGTTAACCAGGATCTGAAATATGCTGGCGAACCGACCCGTGTGGAAATCGGCGATCGTAACCGC > NC_000913/202465‑202832 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |