mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 14,136 | C→T | intergenic (+57/‑32) | dnaK → / → dnaJ | chaperone protein DnaK/chaperone protein DnaJ |
| RA | 23,769 | C→T | P460L (CCT→CTT) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 38,914 | C→T | A68T (GCG→ACG) | caiB ← | gamma‑butyrobetainyl‑CoA:carnitine CoA transferase |
| RA | 46,186 | C→T | A127V (GCC→GTC) | yaaU → | putative transporter YaaU |
| JC JC | 57,276 | IS2 (+) +5 bp | intergenic (‑167/‑84) | lptD ← / → djlA | lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA |
| RA | 60,338 | C→T | M3I (ATG→ATA) | rluA ← | 23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase |
| RA | 71,134 | G→A | G250S (GGT→AGT) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 78,072 | C→T | S151F (TCT→TTT) | setA → | sugar exporter SetA |
| RA | 110,933 | C→T | C885C (TGC→TGT) | secA → | protein translocation ATPase |
| RA | 111,101 | A→G | I20V (ATA→GTA) | mutT → | 8‑oxo‑dGTP diphosphatase |
| RA | 119,204 | G→A | A158T (GCG→ACG) | ampD → | 1,6‑anhydro‑N‑acetylmuramoyl‑L‑alanine amidase |
| RA | 124,223 | G→A | G403S (GGT→AGT) | aceE → | pyruvate dehydrogenase E1 component |
| RA | 126,388 | G→A | V232I (GTT→ATT) | aceF → | pyruvate dehydrogenase, E2 subunit |
| RA | 129,296 | G→A | S462N (AGC→AAC) | lpd → | lipoamide dehydrogenase |
| RA | 131,332 | G→A | intergenic (‑72/‑283) | yacH ← / → acnB | DUF3300 domain‑containing protein YacH/AcnB |
| RA | 135,985 | G→A | T160T (ACC→ACT) | speE ← | spermidine synthase |
| RA | 155,807 | C→T | S132N (AGC→AAC) | yadV ← | putative fimbrial chaperone YadV |
| RA | 158,903 | C→T | G75D (GGC→GAC) | pcnB ← | poly(A) polymerase I |
| RA | 197,396 | C→T | S284F (TCT→TTT) | rseP → | intramembrane zinc metalloprotease RseP |
| RA | 197,698 | C→T | L385F (CTT→TTT) | rseP → | intramembrane zinc metalloprotease RseP |
| RA | 197,886 | C→T | F447F (TTC→TTT) | rseP → | intramembrane zinc metalloprotease RseP |
| RA | 203,227 | A→G | Y223C (TAT→TGT) | lpxA → | acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase |
| RA | 214,288 | C→T | intergenic (‑163/‑3) | yaeP ← / → yaeQ | PF06786 family protein YaeP/uncharacterized protein YaeQ |
| RA | 220,003 | C→T | intergenic (‑8/+110) | rcsF ← / ← metQ | sensor lipoprotein RcsF/L‑methionine/D‑methionine ABC transporter membrane anchored binding protein |
| RA | 229,098 | C→T | intergenic (+94/‑69) | aspU → / → dkgB | tRNA‑Asp/methylglyoxal reductase DkgB |
| RA | 245,295 | C→T | V171M (GTG→ATG) | dpaA ← | peptidoglycan meso‑diaminopimelic acid protein amidase A |
| RA | 250,938 | C→T | A14V (GCC→GTC) | dinB → | DNA polymerase IV |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 258,827 | C→T | pseudogene (152/331 nt) | crl → | RNA polymerase holoenzyme assembly factor Crl |
| RA | 261,468 | C→T | R361C (CGT→TGT) | proB → | glutamate 5‑kinase |
| RA | 271,796 | C→T | pseudogene (33/427 nt) | insN → | IS911A regulator fragment |
| RA | 293,175 | C→T | intergenic (‑227/+45) | yagK ← / ← yagL | uncharacterized protein YagK/resolvase‑like catalytic domain‑containing protein YagL |
| RA | 296,721 | C→T | E126K (GAA→AAA) | intF ← | putative phage integrase |
| RA | 313,745 | C→T | intergenic (‑503/‑1546) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| RA | 319,185 | C→T | A273T (GCA→ACA) | rclA ← | cupric reductase RclA |
| RA | 334,871 | C→T | G51D (GGT→GAT) | yahC ← | uncharacterized protein YahC |
| RA | 353,051 | C→T | P116S (CCG→TCG) | prpE → | propionyl‑CoA synthetase |
| RA | 357,126 | C→T | P319L (CCG→CTG) | codA → | cytosine/isoguanine deaminase |
| RA | 358,860 | C→T | A21V (GCC→GTC) | cynT → | carbonic anhydrase 1 |
| RA | 372,902 | C→T | A263V (GCC→GTC) | mhpD → | 2‑hydroxypentadienoate hydratase |
| RA | 400,626 | C→T | D100N (GAT→AAT) | ddlA ← | D‑alanine‑‑D‑alanine ligase A |
| RA | 409,743 | C→T | A93T (GCG→ACG) | rdgC ← | nucleoid‑associated protein RdgC |
| RA | 450,824 | C→T | V263M (GTG→ATG) | cyoA ← | cytochrome bo3 subunit 2 |
| RA | 466,181 | C→T | E378K (GAA→AAA) | ybaE ← | uncharacterized protein YbaE |
| RA | 473,054 | C→T | A30V (GCC→GTC) | amtB → | ammonium transporter |
| RA | 473,447 | C→T | S161F (TCT→TTT) | amtB → | ammonium transporter |
| RA | 474,765 | C→T | E133K (GAA→AAA) | tesB ← | acyl‑CoA thioesterase II |
| RA | 489,602 | C→T | L1023L (CTG→TTG) | mscK → | potassium dependent, small conductance mechanosensitive channel |
| RA | 510,345 | C→T | M345I (ATG→ATA) | copA ← | Cu(+) exporting P‑type ATPase |
| RA | 515,644 | C→T | G44R (GGG→AGG) | qmcA ← | PHB domain‑containing protein QmcA |
| RA | 533,723 | C→T | P238L (CCT→CTT) noncoding (95/235 nt) |
allR → allZ → |
DNA‑binding transcriptional repressor AllR small RNA AllZ |
| RA | 541,644 | C→T | L360L (CTC→CTT) | ybbY → | putative purine transporter |
| RA | 556,157 | C→T | V133I (GTC→ATC) | ybcI ← | PF04307 family inner membrane protein YbcI |
| RA | 557,635 | A→T | L36Q (CTG→CAG) | folD ← | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase |
| JC JC | 568,449 | IS2 (–) +5 bp | coding (135‑139/333 nt) | emrE → | multidrug/betaine/choline efflux transporter EmrE |
| RA | 580,115 | C→T | intergenic (+29/+136) | ybcW → / ← ylcI | uncharacterized protein YbcW/DUF3950 domain‑containing protein YlcI |
| RA | 580,119 | 2 bp→GT | intergenic (+33/+131) | ybcW → / ← ylcI | uncharacterized protein YbcW/DUF3950 domain‑containing protein YlcI |
| RA | 618,222 | C→T | intergenic (+184/‑32) | entF → / → fepE | apo‑serine activating enzyme/polysaccharide co‑polymerase family protein FepE |
| RA | 631,633 | G→A | W580* (TGG→TGA) | cstA → | pyruvate transporter CstA |
| RA | 646,088 | C→T | G165S (GGT→AGT) | citT ← | citrate:succinate antiporter |
| RA | 658,184 | C→T | intergenic (‑246/‑763) | crcB ← / → tatE | F(‑) channel protein/twin arginine protein translocation system ‑ TatE protein |
| RA | 676,374 | C→T | E58E (GAG→GAA) | ybeQ ← | Sel1 repeat‑containing protein YbeQ |
| RA | 690,924 | C→T | Q287Q (CAG→CAA) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 715,506 | C→T | A32V (GCT→GTT) | ybfP → | lipoprotein YbfP |
| RA | 719,561 | G→A | A300A (GCC→GCT) | speF ← | inducible ornithine decarboxylase |
| RA | 722,911 | C→T | A502T (GCG→ACG) | kdpD ← | sensor histidine kinase KdpD |
| RA | 723,973 | C→T | E148K (GAA→AAA) | kdpD ← | sensor histidine kinase KdpD |
| RA | 724,260 | C→T | G52E (GGG→GAG) | kdpD ← | sensor histidine kinase KdpD |
| RA | 726,513 | G→A | S175F (TCC→TTC) | kdpB ← | K(+) transporting P‑type ATPase subunit KdpB |
| RA | 733,473 | G→A | R1297R (CGG→CGA) | rhsC → | rhs element protein RhsC |
| RA | 735,857 | G→A | G70S (GGT→AGT) | ybfC → | uncharacterized protein YbfC |
| RA | 737,051 | G→A | intergenic (+352/‑1041) | ybfQ → / → ybfD | inactive transposase YbfQ/H repeat‑associated putative transposase YbfD |
| RA | 737,311 | G→A | intergenic (+612/‑781) | ybfQ → / → ybfD | inactive transposase YbfQ/H repeat‑associated putative transposase YbfD |
| RA | 740,913 | G→A | R469R (CGG→CGA) | phr → | deoxyribodipyrimidine photolyase |
| RA | 747,106 | G→A | L222F (CTC→TTC) | abrB ← | putative regulator |
| RA | 751,155 | G→A | Q339* (CAG→TAG) | ybgQ ← | putative fimbrial usher protein YbgQ |
| RA | 751,665 | G→A | P169S (CCA→TCA) | ybgQ ← | putative fimbrial usher protein YbgQ |
| RA | 752,542 | G→A | A85V (GCT→GTT) | ybgD ← | putative fimbrial protein YbgD |
| RA | 760,877 | G→A | G724G (GGG→GGA) | sucA → | subunit of E1(0) component of 2‑oxoglutarate dehydrogenase |
| RA | 761,330 | G→A | E875E (GAG→GAA) | sucA → | subunit of E1(0) component of 2‑oxoglutarate dehydrogenase |
| RA | 766,301 | G→A | P106P (CCG→CCA) | mngA → | 2‑O‑alpha‑mannosyl‑D‑glycerate specific PTS enzyme II |
| RA | 767,857 | G→A | G625D (GGC→GAC) | mngA → | 2‑O‑alpha‑mannosyl‑D‑glycerate specific PTS enzyme II |
| RA | 768,342 | G→A | G122D (GGT→GAT) | mngB → | alpha‑mannosidase |
| RA | 773,693 | G→A | A218T (GCT→ACT) | cydB → | cytochrome bd‑I subunit 2 |
| RA | 774,446 | G→A | L46L (CTG→CTA) | ybgE → | PF09600 family protein YbgE |
| RA | 779,092 | G→A | G9E (GGG→GAG) | pal → | peptidoglycan‑associated outer membrane lipoprotein Pal |
| RA | 780,042 | G→A | A149T (GCT→ACT) | cpoB → | cell division coordinator CpoB |
| RA | 780,845 | G→A | noncoding (3/76 nt) | lysW → | tRNA‑Lys |
| RA | 788,642 | C→T | A66T (GCC→ACC) | galM ← | galactose‑1‑epimerase |
| RA | 791,164 | C→T | A298T (GCC→ACC) | galE ← | UDP‑glucose 4‑epimerase |
| RA | 794,092 | G→A | P185S (CCG→TCG) | modE ← | DNA‑binding transcriptional dual regulator ModE |
| RA | 796,541 | C→T | A227V (GCG→GTG) | modB → | molybdate ABC transporter membrane subunit |
| RA | 808,338 | C→T | G307E (GGG→GAG) | bioA ← | adenosylmethionine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | 809,980 | C→T | P213S (CCG→TCG) | bioB → | biotin synthase |
| RA | 812,585 | C→T | L106F (CTT→TTT) | bioD → | dethiobiotin synthetase |
| RA | 820,340 | C→T | L153L (CTG→TTG) | ybhL → | Bax1‑I family protein YbhL |
| RA | 823,314 | C→T | E142E (GAG→GAA) | clsB ← | cardiolipin synthase B |
| RA | 826,170 | C→T | A361A (GCG→GCA) | ybhS ← | ABC exporter membrane subunit YbhS |
| RA | 828,038 | C→T | G315D (GGC→GAC) | ybhF ← | ABC exporter ATP binding subunit YbhF |
| RA | 830,226 | C→T | V140M (GTG→ATG) | cecR ← | DNA‑binding transcriptional dual regulator CecR |
| RA | 832,446 | C→T | intergenic (+210/+22) | rhlE → / ← ybiA | ATP‑dependent RNA helicase RhlE/N‑glycosidase YbiA |
| RA | 832,915 | C→T | M12I (ATG→ATA) | ybiA ← | N‑glycosidase YbiA |
| RA | 832,955 | C→T | intergenic (‑5/‑115) | ybiA ← / → dinG | N‑glycosidase YbiA/ATP‑dependent DNA helicase DinG |
| RA | 834,538 | C→T | S490F (TCC→TTC) | dinG → | ATP‑dependent DNA helicase DinG |
| RA | 839,888 | C→T | A548A (GCG→GCA) | fiu ← | iron catecholate outer membrane transporter Fiu |
| RA | 840,003 | C→T | G510D (GGC→GAC) | fiu ← | iron catecholate outer membrane transporter Fiu |
| RA | 840,587 | C→T | E315E (GAG→GAA) | fiu ← | iron catecholate outer membrane transporter Fiu |
| RA | 841,944 | C→T | G38D (GGT→GAT) | mcbA ← | DUF1471 domain‑containing protein McbA |
| RA | 845,100 | C→T | K127K (AAG→AAA) | ybiO ← | moderate conductance mechanosensitive channel YbiO |
| RA | 846,229 | C→T | A79T (GCA→ACA) | glnQ ← | L‑glutamine ABC transporter ATP binding subunit |
| RA | 855,252 | C→T | G165S (GGC→AGC) | ldtB ← | L,D‑transpeptidase LdtB |
| RA | 855,421 | C→T | M108I (ATG→ATA) | ldtB ← | L,D‑transpeptidase LdtB |
| RA | 857,970 | C→T | A364A (GCG→GCA) | ybiU ← | DUF1479 domain‑containing protein YbiU |
| RA | 858,144 | C→T | A306A (GCG→GCA) | ybiU ← | DUF1479 domain‑containing protein YbiU |
| RA | 858,557 | C→T | E169K (GAA→AAA) | ybiU ← | DUF1479 domain‑containing protein YbiU |
| RA | 860,898 | C→T | G570D (GGC→GAC) | ybiW ← | putative pyruvate formate lyase |
| RA | 861,220 | C→T | A463T (GCC→ACC) | ybiW ← | putative pyruvate formate lyase |
| RA | 862,842 | C→T | G224S (GGC→AGC) | ybiY ← | putative pyruvate formate‑lyase activating enzyme YbiY |
| RA | 869,891 | C→T | P161S (CCG→TCG) | gsiB → | glutathione ABC transporter periplasmic binding protein |
| RA | 987,152 | G→T | intergenic (‑170/+433) | ompF ← / ← asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| RA | 1,059,547 | G→A | A98T (GCG→ACG) | torA → | trimethylamine N‑oxide reductase 1 |
| JC JC | 1,105,376 | IS2 (–) +5 bp | intergenic (+83/‑34) | csgC → / → ymdA | curlin chaperone/uncharacterized protein YmdA |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,214,463 | C→T | S338N (AGT→AAT) | bluF ← | blue light‑ and temperature‑regulated antirepressor BluF |
| RA | 1,247,746 | C→T | E457K (GAA→AAA) | dhaM ← | dihydroxyacetone kinase subunit M |
| RA | 1,290,881 | C→T | L214F (CTT→TTT) | rssB → | regulator of RpoS |
| MC JC | 1,294,035 | Δ141 bp | [tdk] | [tdk] | |
| MC JC | 1,303,073 | Δ12 bp | coding (175‑186/921 nt) | oppB → | murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,353,758 | T→A | D254V (GAT→GTT) | sapC ← | putrescine ABC exporter membrane protein SapC |
| RA | 1,494,388 | Δ1 bp | coding (684/924 nt) | ydcI ← | DNA‑binding transcriptional dual regulator YdcI |
| RA | 1,501,912 | T→C | I117I (ATT→ATC) | tehB → | tellurite methyltransferase |
| RA | 1,517,508 | G→T | V40V (GTG→GTT) | ortT → | orphan toxin OrtT |
| RA | 1,540,902 | G→A | F563F (TTC→TTT) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,541,836 | G→A | A252V (GCC→GTC) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,547,902 | G→A | G168S (GGT→AGT) | fdnG → | formate dehydrogenase N subunit alpha |
| RA | 1,573,627 | G→A | L526F (CTT→TTT) | pqqL ← | periplasmic metalloprotease |
| RA | 1,582,397 | G→A | A43V (GCT→GTT) | ydeN ← | putative sulfatase YdeN |
| RA | 1,590,212 | G→A | intergenic (‑211/+642) | ydeT ← / ← hipA | fimbrial usher domain‑containing protein YdeT/serine/threonine‑protein kinase toxin HipA |
| RA | 1,597,469 | G→A | intergenic (‑5027/+1148) | hipB ← / ← lsrK | antitoxin/DNA‑binding transcriptional repressor HipB/autoinducer‑2 kinase |
| RA | 1,599,597 | G→A | P205S (CCT→TCT) | lsrK ← | autoinducer‑2 kinase |
| RA | 1,606,028 | G→A | E326E (GAG→GAA) | lsrB → | Autoinducer‑2 ABC transporter periplasmic binding protein |
| RA | 1,608,550 | C→T | R158H (CGT→CAT) | yneE ← | PF01062 family inner membrane protein YneE |
| RA | 1,616,014 | G→A | K84K (AAG→AAA) | yneK → | protein YneK |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,667,887 | Δ1 bp | coding (678/1221 nt) | mlc ← | DNA‑binding transcriptional repressor Mlc |
| RA | 1,716,945 | G→A | T93I (ACC→ATC) | tyrS ← | tyrosine‑‑tRNA ligase |
| RA | 1,744,751 | Δ1 bp | coding (1295/1374 nt) | mdtK → | multidrug efflux pump MdtK |
| RA | 1,849,125 | C→T | L97L (CTG→TTG) | sppA → | protease IV, a signal peptide peptidase |
| RA | 1,850,605 | C→T | T590I (ACC→ATC) | sppA → | protease IV, a signal peptide peptidase |
| RA | 1,866,159 | C→T | R105H (CGT→CAT) | mipA ← | MltA‑interacting protein |
| RA | 1,867,262 | C→T | L119F (CTT→TTT) | yeaG → | protein kinase YeaG |
| RA | 1,867,508 | C→T | P201S (CCG→TCG) | yeaG → | protein kinase YeaG |
| RA | 1,877,158 | G→A | D84N (GAC→AAC) | yeaO → | DUF488 domain‑containing protein YeaO |
| RA | 1,878,257 | G→A | G181G (GGG→GGA) | dgcP → | diguanylate cyclase DgcP |
| RA | 1,879,192 | G→A | P22S (CCA→TCA) | yeaQ ← | PF04226 family protein YeaQ |
| RA | 1,881,996 | G→A | A29T (GCT→ACT) | dmlA → | D‑malate/3‑isopropylmalate dehydrogenase (decarboxylating) |
| RA | 1,900,052 | G→A | P512S (CCG→TCG) | yoaE ← | TerC family inner membrane protein YoaE |
| RA | 1,909,414 | G→A | P229L (CCG→CTG) | kdgR ← | DNA‑binding transcriptional repressor KdgR |
| RA | 1,912,335 | G→A | T81I (ACT→ATT) | htpX ← | protease HtpX |
| RA | 1,912,831 | G→A | I662I (ATC→ATT) | prc ← | tail‑specific protease |
| RA | 1,914,209 | G→A | A203V (GCG→GTG) | prc ← | tail‑specific protease |
| RA | 1,914,908 | G→A | T209T (ACC→ACT) | proQ ← | RNA chaperone ProQ |
| RA | 1,917,717 | G→A | G70S (GGC→AGC) | letB → | lipophilic envelope spanning tunnel |
| RA | 1,923,571 | G→A | L46L (CTG→TTG) | yebY ← | DUF2511 domain‑containing protein YebY |
| RA | 1,928,378 | G→A | G154G (GGC→GGT) | ptrB ← | oligopeptidase B |
| RA | 1,929,111 | G→A | P199P (CCC→CCT) | yebE ← | DUF533 domain‑containing inner membrane protein YebE |
| RA | 1,978,243 | G→T | intergenic (‑46/+275) | flhD ← / ← insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB |
| RA | 2,003,264 | C→T | E115K (GAA→AAA) | fliC ← | flagellar filament structural protein |
| RA | 2,032,423 | G→A | V219V (GTC→GTT) | yedJ ← | putative HD superfamily phosphohydrolase YedJ |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,242,121 | A→G | S283P (TCG→CCG) | yeiB ← | DUF418 domain‑containing protein YeiB |
| JC JC | 2,269,876 | IS5 (+) +4 bp | intergenic (+309/‑100) | lpxT → / → mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| JC JC | 2,319,850 | IS2 (+) +5 bp | coding (23‑27/2850 nt) | rcsC ← | histidine kinase RcsC |
| RA | 2,328,745 | G→A | R351R (CGC→CGT) | yfaQ ← | tandem DUF2300 domain‑containing protein YfaQ |
| RA | 2,397,444 | G→A | Q908* (CAA→TAA) | nuoG ← | NADH:quinone oxidoreductase subunit G |
| JC JC | 2,406,780 | IS1 (–) +8 bp | intergenic (‑139/‑774) | lrhA ← / → alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| RA | 2,594,834 | G→A | T342T (ACC→ACT) | tmcA ← | tRNA(Met) cytidine acetyltransferase |
| JC JC | 2,666,074 | IS1 (+) +9 bp | coding (640‑648/1281 nt) | csiE → | stationary phase‑inducible protein CsiE |
| RA | 2,705,723 | G→A | L468L (CTG→TTG) | lepA ← | 30S ribosomal subunit biogenesis factor LepA |
| RA | 2,712,609 | G→A | G52G (GGC→GGT) | yfiC ← | tRNA m(6)A37 methyltransferase |
| RA | 2,721,243 | G→A | G431R (GGA→AGA) | patZ → | peptidyl‑lysine N‑acetyltransferase |
| RA | 2,721,897 | G→A | D649N (GAT→AAT) | patZ → | peptidyl‑lysine N‑acetyltransferase |
| RA | 2,723,212 | G→A | Q162Q (CAG→CAA) | pssA → | phosphatidylserine synthase |
| RA | 2,724,774 | G→A | P325S (CCT→TCT) | kgtP ← | alpha‑ketoglutarate:H(+) symporter |
| RA | 2,724,855 | G→A | L298F (CTC→TTC) | kgtP ← | alpha‑ketoglutarate:H(+) symporter |
| RA | 2,729,371 | G→A | noncoding (74/76 nt) | gltW ← | tRNA‑Glu |
| RA | 2,734,583 | G→A | A151V (GCC→GTC) | yfiH ← | purine nucleoside phosphorylase YfiH |
| RA | 2,738,500 | G→A | L252L (TTG→TTA) | pheA → | fused chorismate mutase/prephenate dehydratase |
| RA | 2,744,277 | G→A | S85F (TCT→TTT) | rplS ← | 50S ribosomal subunit protein L19 |
| RA | 2,745,598 | G→A | Y107Y (TAC→TAT) | rimM ← | ribosome maturation factor RimM |
| RA | 2,755,646 | G→A | noncoding (54/363 nt) | ssrA → | tmRNA |
| RA | 2,756,320 | G→A | Q54Q (CAG→CAA) | intA → | integrase IntA |
| RA | 2,756,503 | G→A | W115* (TGG→TGA) | intA → | integrase IntA |
| RA | 2,756,920 | G→A | E254E (GAG→GAA) | intA → | integrase IntA |
| RA | 2,760,972 | G→A | W142* (TGG→TGA) | yfjJ → | protein YfjJ |
| RA | 2,768,846 | G→A | G61D (GGC→GAC) | yfjQ → | DUF932 domain‑containing protein YfjQ |
| RA | 2,783,717 | G→A | S238F (TCC→TTC) | ypjB ← | DUF5508 domain‑containing protein YpjB |
| RA | 2,786,712 | G→A | intergenic (‑875/‑2273) | ileY ← / → glaH | tRNA‑Ile/glutarate dioxygenase GlaH |
| RA | 2,791,708 | C→T | P146S (CCG→TCG) | gabD → | succinate‑semialdehyde dehydrogenase (NADP(+)) GabD |
| RA | 2,807,994 | C→T | A288V (GCC→GTC) | proX → | glycine betaine ABC transporter periplasmic binding protein ProX |
| RA | 2,810,638 | C→T | L99L (CTG→TTG) | ygaH → | L‑valine exporter, YgaH component |
| RA | 2,813,483 | C→T | L290L (CTG→TTG) | emrB → | multidrug efflux pump membrane subunit EmrB |
| RA | 2,819,860 | C→T | A718T (GCG→ACG) | alaS ← | alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor |
| RA | 2,830,658 | C→T | A282A (GCC→GCT) | gutQ → | D‑arabinose 5‑phosphate isomerase GutQ |
| RA | 2,836,133 | C→T | W431* (TGG→TGA) | hypF ← | carbamoyl‑‑[HypE] ligase |
| RA | 2,837,623 | T→C | E161E (GAA→GAG) | hydN ← | putative electron transport protein HydN |
| RA | 2,838,600 | C→T | W222* (TGG→TAG) | ascG ← | DNA‑binding transcriptional repressor AscG |
| RA | 2,854,523 | C→T | Y62Y (TAC→TAT) | fhlA → | DNA‑binding transcriptional activator FhlA |
| RA | 2,857,938 | C→T | N282N (AAC→AAT) | mutS → | DNA mismatch repair protein MutS |
| RA | 2,865,376 | C→T | F92F (TTC→TTT) | ygbN → | putative transporter YgbN |
| RA | 2,879,047 | C→T | E242E (GAG→GAA) | cas1 ← | multifunctional nuclease Cas1 |
| RA | 2,892,551 | C→T | T113I (ACC→ATC) | queD → | 6‑carboxy‑5,6,7,8‑tetrahydropterin synthase |
| RA | 2,897,943 | C→T | intergenic (‑73/+21) | ygcS ← / ← ygcU | putative transporter YgcS/putative FAD‑containing dehydrogenase |
| RA | 2,906,661 | C→T | E427E (GAG→GAA) | eno ← | enolase |
| RA | 2,911,729 | C→T | L641L (CTG→CTA) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 2,919,753 | C→T | G332R (GGG→AGG) | gudX ← | glucarate dehydratase‑related protein |
| RA | 2,921,503 | C→T | V200I (GTC→ATC) | gudP ← | galactarate/D‑glucarate transporter GudP |
| RA | 2,935,970 | C→T | S129S (AGC→AGT) | fucI → | L‑fucose isomerase |
| RA | 2,943,893 | C→T | A186V (GCT→GTT) | csdA → | cysteine sulfinate desulfinase |
| RA | 2,953,618 | C→T | A796T (GCG→ACG) | recB ← | exodeoxyribonuclease V subunit RecB |
| RA | 2,955,071 | C→T | E311E (GAG→GAA) | recB ← | exodeoxyribonuclease V subunit RecB |
| RA | 2,960,257 | C→T | Q724Q (CAG→CAA) | recC ← | exodeoxyribonuclease V subunit RecC |
| RA | 2,964,412 | C→T | E248E (GAG→GAA) | thyA ← | thymidylate synthase |
| RA | 2,967,640 | G→A | G265G (GGC→GGT) | ptsP ← | phosphoenolpyruvate‑protein phosphotransferase PtsP |
| RA | 2,980,511 | C→T | S42N (AGC→AAC) | ygeA ← | amino acid racemase YgeA |
| RA | 2,982,637 | C→T | E208K (GAA→AAA) | kduD ← | putative 2‑keto‑3‑deoxy‑D‑gluconate dehydrogenase |
| RA | 2,983,972 | C→T | M51I (ATG→ATA) | kduI ← | 5‑dehydro‑4‑deoxy‑D‑glucuronate isomerase |
| RA | 3,009,970 | G→A | E403K (GAG→AAG) | ygeY → | putative peptidase YgeY |
| RA | 3,018,530 | G→A | G824D (GGC→GAC) | ygfK → | putative oxidoreductase, Fe‑S subunit |
| RA | 3,018,884 | G→A | G942D (GGC→GAC) | ygfK → | putative oxidoreductase, Fe‑S subunit |
| RA | 3,020,602 | C→T | Y21Y (TAC→TAT) | ygfM → | putative oxidoreductase |
| RA | 3,024,475 | C→T | P42L (CCC→CTC) | xanQ → | xanthine:H(+) symporter XanQ |
| RA | 3,027,290 | G→A | G57D (GGC→GAC) | ghxQ → | guanine/hypoxanthine transporter GhxQ |
| RA | 3,035,820 | G→A | R154R (CGC→CGT) | prfB ← | peptide chain release factor RF2 |
| RA | 3,040,041 | G→A | E63K (GAA→AAA) | fldB → | flavodoxin 2 |
| RA | 3,041,375 | G→A | L21L (CTG→CTA) | ygfZ → | folate‑binding protein |
| RA | 3,043,834 | G→A | G58E (GGA→GAA) | bglA → | 6‑phospho‑beta‑glucosidase A |
| RA | 3,054,691 | G→A | F50F (TTC→TTT) | pepP ← | Xaa‑Pro aminopeptidase |
| RA | 3,060,430 | G→A | A226A (GCG→GCA) | argP → | DNA‑binding transcriptional dual regulator ArgP |
| RA | 3,064,539 | G→A | E183K (GAA→AAA) | scpB → | methylmalonyl‑CoA decarboxylase |
| RA | 3,084,483 | G→A | L477L (CTG→TTG) | speA ← | biosynthetic arginine decarboxylase |
| RA | 3,084,753 | G→A | P387S (CCG→TCG) | speA ← | biosynthetic arginine decarboxylase |
| RA | 3,087,272 | G→A | Q189Q (CAG→CAA) | metK → | methionine adenosyltransferase |
| RA | 3,090,437 | G→A | A31T (GCG→ACG) | endA → | DNA‑specific endonuclease I |
| RA | 3,091,050 | G→A | S235N (AGC→AAC) | endA → | DNA‑specific endonuclease I |
| RA | 3,093,181 | G→A | R82H (CGC→CAC) | yqgE → | DUF179 domain‑containing protein YqgE |
| RA | 3,099,756 | G→A | R325C (CGC→TGC) | ansB ← | L‑asparaginase 2 |
| RA | 3,104,400 | G→A | intergenic (+32/‑33) | yggX → / → mltC | putative Fe(2(+))‑trafficking protein/membrane‑bound lytic murein transglycosylase C |
| RA | 3,115,239 | G→A | P1292S (CCG→TCG) | yghJ ← | putative lipoprotein YghJ |
| RA | 3,141,250 | G→A | L13L (CTG→TTG) | hybD ← | hydrogenase 2 maturation protease |
| RA | 3,142,691 | G→A | T100I (ACC→ATC) | hybC ← | hydrogenase 2 large subunit |
| RA | 3,142,842 | G→A | P50S (CCG→TCG) | hybC ← | hydrogenase 2 large subunit |
| RA | 3,156,084 | G→A | V244I (GTC→ATC) | yqhD → | NADPH‑dependent aldehyde reductase YqhD |
| RA | 3,158,635 | G→A | T3T (ACG→ACA) | yqhH → | lipoprotein YqhH |
| RA | 3,167,670 | G→A | P17S (CCT→TCT) | ygiS ← | putative deoxycholate binding periplasmic protein |
| RA | 3,171,411 | G→A | E310K (GAG→AAG) | qseC → | sensor histidine kinase QseC |
| RA | 3,225,963 | C→T | A81V (GCG→GTG) | ebgC → | DUF386 domain‑containing evolved beta‑D‑galactosidase subunit beta |
| RA | 3,227,114 | C→T | T294I (ACC→ATC) | ygjI → | putative transporter YgjI |
| RA | 3,250,599 | G→A | R13H (CGC→CAC) | yqjF → | DoxX family protein |
| RA | 3,253,119 | G→A | R70H (CGC→CAC) | yhaI → | putative inner membrane protein |
| RA | 3,268,970 | A→G | T186A (ACA→GCA) | yhaC → | uncharacterized protein YhaC |
| RA | 3,439,389 | G→A | P41S (CCG→TCG) | yhdN ← | DUF1992 domain‑containing protein YhdN |
| RA | 3,441,396 | G→A | L94L (CTG→TTG) | rpsD ← | 30S ribosomal subunit protein S4 |
| RA | 3,450,847 | G→A | T173I (ACC→ATC) | rplB ← | 50S ribosomal subunit protein L2 |
| RA | 3,486,205 | C→A | T29K (ACG→AAG) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,510,022 | C→T | E319K (GAA→AAA) | yhfX ← | putative PLP‑binding protein YhfX |
| RA | 3,512,791 | C→T | G283D (GGT→GAT) | trpS ← | tryptophan‑‑tRNA ligase |
| RA | 3,513,204 | C→T | P145P (CCG→CCA) | trpS ← | tryptophan‑‑tRNA ligase |
| RA | 3,514,681 | C→T | D127N (GAT→AAT) | rpe ← | ribulose‑phosphate 3‑epimerase |
| RA | 3,519,285 | C→T | intergenic (‑221/+180) | aroK ← / ← hofQ | shikimate kinase 1/DNA utilization protein HofQ |
| RA | 3,523,837 | C→T | L323L (CTG→TTG) | mrcA → | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA |
| RA | 3,528,294 | C→T | A609V (GCT→GTT) | igaA → | inner membrane protein IgaA |
| RA | 3,537,058 | G→A | G83S (GGC→AGC) | greB → | transcription elongation factor GreB |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,569,134 | C→T | G65G (GGG→GGA) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
| RA | 3,569,284 | C→T | Q15Q (CAG→CAA) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
| RA | 3,592,762 | C→T | A226T (GCG→ACG) | livF ← | branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF |
| RA | 3,632,560 | C→T | D11N (GAC→AAC) | yhiJ ← | DUF4049 domain‑containing protein YhiJ |
| MC JC | 3,682,261 | Δ34 bp | coding (1154‑1187/1287 nt) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| JC JC | 3,737,137 | IS2 (+) +5 bp | coding (37‑41/825 nt) | bax ← | putative glycoside hydrolase Bax |
| RA | 3,931,737 | C→T | T141I (ACC→ATC) | kup → | K(+):H(+) symporter Kup |
| JC JC | 4,123,923 | IS2 (–) +5 bp | coding (530‑534/1026 nt) | cytR ← | DNA‑binding transcriptional repressor CytR |
| JC JC | 4,135,180 | IS2 (–) +5 bp | coding (1346‑1350/2181 nt) | katG → | catalase/hydroperoxidase HPI |
| RA | 4,146,389 | (T)6→7 | coding (132/879 nt) | pflC → | putative pyruvate formate‑lyase 2 activating enzyme PflC |
| RA | 4,215,023 | C→T | F248F (TTC→TTT) | metA → | homoserine O‑succinyltransferase |
| RA | 4,215,796 | C→T | L107F (CTC→TTC) | aceB → | malate synthase A |
| RA | 4,217,843 | C→T | C245C (TGC→TGT) | aceA → | isocitrate lyase |
| RA | 4,218,459 | C→T | intergenic (+46/‑137) | aceA → / → aceK | isocitrate lyase/isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,228,406 | C→T | L226F (CTC→TTC) | yjbB → | putative inorganic phosphate export protein YjbB |
| RA | 4,237,200 | C→T | Q102* (CAG→TAG) | yjbG → | capsule biosynthesis GfcC family protein YjbG |
| RA | 4,243,528 | C→T | intergenic (‑12/+3) | malG ← / ← malF | maltose ABC transporter membrane subunit MalG/maltose ABC transporter membrane subunit MalF |
| RA | 4,253,284 | C→T | A90V (GCG→GTG) | ubiA → | 4‑hydroxybenzoate octaprenyltransferase |
| RA | 4,253,343 | C→T | L110L (CTG→TTG) | ubiA → | 4‑hydroxybenzoate octaprenyltransferase |
| RA | 4,346,121 | C→T | E402E (GAG→GAA) | fumB ← | fumarase B |
| RA | 4,347,028 | C→T | G100D (GGC→GAC) | fumB ← | fumarase B |
| RA | 4,366,530 | G→A | R82C (CGT→TGT) | dcuA ← | C4‑dicarboxylate transporter DcuA |
| RA | 4,369,674 | C→T | E247K (GAA→AAA) | yjeH ← | L‑methionine/branched chain amino acid exporter |
| RA | 4,376,438 | G→A | S41N (AGC→AAC) | ecnA → | entericidin A lipoprotein, antidote to entericidin B |
| RA | 4,464,811 | G→A | T457I (ACC→ATC) | treB ← | trehalose‑specific PTS enzyme IIBC component |
| RA | 4,472,103 | G→A | T98I (ACT→ATT) | pyrB ← | aspartate carbamoyltransferase catalytic subunit |
| RA | 4,473,265 | G→A | intergenic (‑56/+75) | yjgH ← / ← bdcA | RutC family protein YjgH/c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,482,228 | G→A | P537L (CCG→CTG) | valS ← | valine‑‑tRNA ligase |
| RA | 4,487,189 | G→A | K324K (AAG→AAA) | lptF → | lipopolysaccharide transport system protein LptF |
| RA | 4,496,246 | G→A | intergenic (‑37/‑159) | ahr ← / → leuX | NADPH‑dependent aldehyde reductase Ahr/tRNA‑Leu |
| RA | 4,497,794 | G→A | intergenic (+1305/‑478) | leuX → / → insC6 | tRNA‑Leu/IS2 insertion element repressor InsA |
| RA | 4,497,882 | G→A | intergenic (+1393/‑390) | leuX → / → insC6 | tRNA‑Leu/IS2 insertion element repressor InsA |
| RA | 4,499,871 | G→A | intergenic (+371/‑1389) | insD6 → / → yjgZ | IS2 insertion element protein InsB/uncharacterized protein YjgZ |
| RA | 4,506,221 | G→A | R312K (AGA→AAA) | nanY → | 2,7‑anhydro‑N‑acetylneuraminate hydratase |
| RA | 4,518,915 | G→A | intergenic (+113/+423) | insA7 → / ← yjhU | IS1 family repressor protein InsA/putative DNA‑binding transcriptional regulator YjhU |
| RA | 4,519,461 | G→A | F288F (TTC→TTT) | yjhU ← | putative DNA‑binding transcriptional regulator YjhU |
| RA | 4,527,451 | G→A | S29S (AGC→AGT) | sgcE ← | putative epimerase SgcE |
| RA | 4,529,464 | G→A | I260I (ATC→ATT) | sgcC ← | putative PTS enzyme IIC component SgcC |
| RA | 4,535,060 | G→A | intergenic (‑1007/‑1537) | topAI ← / → ythB | toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB |
| RA | 4,535,672 | G→A | intergenic (‑1619/‑925) | topAI ← / → ythB | toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB |
| RA | 4,536,025 | G→A | intergenic (‑1972/‑572) | topAI ← / → ythB | toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB |
| JC JC | 4,536,236 | IS5 (+) +4 bp | intergenic (‑2183/‑358) | topAI ← / → ythB | toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB |
| RA | 4,542,683 | Δ1 bp | intergenic (+50/‑432) | fimE → / → fimA | regulator for fimA/type 1 fimbriae major subunit |
| RA | 4,544,956 | G→A | G218E (GGA→GAA) | fimC → | type 1 fimbriae periplasmic chaperone |
| RA | 4,547,328 | G→A | A745T (GCC→ACC) | fimD → | type I fimbriae usher protein |
| RA | 4,547,862 | G→A | A41T (GCC→ACC) | fimF → | type 1 fimbriae minor subunit FimF |
| MC JC | 4,549,192 | Δ39 bp | coding (385‑423/903 nt) | fimH → | type 1 fimbriae D‑mannose specific adhesin |
| RA | 4,562,620 | C→T | G19E (GGG→GAG) | yjiJ ← | putative transporter YjiJ |
| RA | 4,569,129 | C→T | intergenic (‑402/+1033) | ytiE ← / ← yjiR | protein YtiE/fused putative DNA‑binding transcriptional regulator/putative aminotransferase YjiR |
| RA | 4,577,700 | G→A | L87F (CTT→TTT) | mcrC ← | Type IV methyl‑directed restriction enzyme EcoKMcrBC subunit |
| RA | 4,577,948 | G→A | P4L (CCC→CTC) | mcrC ← | Type IV methyl‑directed restriction enzyme EcoKMcrBC subunit |
| RA | 4,598,800 | G→A | G214G (GGC→GGT) | opgB ← | phosphoglycerol transferase I |
| RA | 4,600,930 | G→A | P16S (CCT→TCT) | dnaC ← | DNA replication protein DnaC |
| RA | 4,602,252 | G→A | L203L (CTG→TTG) | yjjP ← | putative succinate exporter YjjP |
| RA | 4,606,093 | G→A | noncoding (73/87 nt) | leuV ← | tRNA‑Leu |
| RA | 4,610,833 | G→A | V474I (GTA→ATA) | prfC → | peptide chain release factor RF3 |
| RA | 4,615,442 | G→A | R34R (CGC→CGT) | yjjW ← | putative glycyl‑radical enzyme activating enzyme YjjW |
| RA | 4,617,261 | G→A | intergenic (‑196/‑62) | yjjI ← / → deoC | DUF3029 domain‑containing protein YjjI/deoxyribose‑phosphate aldolase |
| RA | 4,617,368 | G→A | D16N (GAC→AAC) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,636,144 | G→A | Q46Q (CAG→CAA) | creB → | DNA‑binding transcriptional regulator CreB |
| RA | 4,639,804 | G→A | A168V (GCC→GTC) | arcA ← | DNA‑binding transcriptional dual regulator ArcA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 118574 | 118634 | 61 | 2 [1] | [1] 2 | nadC | quinolinate phosphoribosyltransferase (decarboxylating) |
| * | * | ÷ | NC_000913 | 164549 | 164638 | 90 | 2 [1] | [1] 2 | hrpB/mrcB | RNA‑dependent NTPase HrpB/peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB |
| * | * | ÷ | NC_000913 | 245695 | 245742 | 48 | 2 [1] | [1] 2 | dpaA | peptidoglycan meso‑diaminopimelic acid protein amidase A |
| * | * | ÷ | NC_000913 | 332863 | 332978 | 116 | 2 [1] | [1] 2 | pdeL | DNA‑binding transcriptional regulator/c‑di‑GMP phosphodiesterase PdeL |
| * | * | ÷ | NC_000913 | 384663 | 384719 | 57 | 2 [1] | [0] 2 | yaiS/tauA | putative deacetylase YaiS/taurine ABC transporter periplasmic binding protein |
| * | * | ÷ | NC_000913 | 652197 | 652213 | 17 | 3 [1] | [1] 2 | citC/dpiB | citrate lyase synthetase/sensor histidine kinase DpiB |
| * | * | ÷ | NC_000913 | 807338 | 807360 | 23 | 2 [1] | [1] 2 | ybhC/ybhB | outer membrane lipoprotein YbhC/putative kinase inhibitor |
| * | * | ÷ | NC_000913 | 1107522 | 1107620 | 99 | 3 [1] | [1] 2 | clsC | cardiolipin synthase C |
| * | * | ÷ | NC_000913 | 1194254 | 1194308 | 55 | 2 [1] | [1] 2 | [nudJ]–[rluE] | [nudJ],[rluE] |
| * | * | ÷ | NC_000913 | 1196371 | 1211432 | 15062 | 2 [1] | [1] 2 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1254788 | 1254835 | 48 | 2 [1] | [1] 2 | ycgV | putative autotransporter adhesin YcgV |
| * | * | ÷ | NC_000913 | 1299488 | 1300693–1299494 | 7–1206 | 2 [1] | [0] 2 | insH21 | insH21 |
| * | * | ÷ | NC_000913 | 1331647 | 1331707 | 61 | 2 [0] | [1] 2 | topA | DNA topoisomerase 1 |
| * | * | ÷ | NC_000913 | 1351182 | 1351222 | 41 | 2 [1] | [1] 2 | fabI/ycjD | enoyl‑[acyl‑carrier‑protein] reductase/DUF559 domain‑containing protein YcjD |
| * | * | ÷ | NC_000913 | 1353263 | 1353304 | 42 | 2 [1] | [0] 2 | sapD | putrescine ABC exporter ATP binding protein SapD |
| * | * | ÷ | NC_000913 | 1491579 | 1491638 | 60 | 2 [1] | [1] 2 | rydC/ydcA | small regulatory RNA RydC/protein YdcA |
| * | * | ÷ | NC_000913 | 1536797 | 1536830 | 34 | 2 [1] | [1] 2 | narW | NarW, putative private chaperone for NarZ nitrate reductase subunit |
| * | * | ÷ | NC_000913 | 1606169 | 1606204 | 36 | 2 [1] | [1] 2 | lsrF | 3‑hydroxy‑2,4‑pentadione 5‑phosphate thiolase |
| * | * | ÷ | NC_000913 | 1787358 | 1787385 | 28 | 2 [1] | [1] 2 | ppsA/ppsR | phosphoenolpyruvate synthetase/phosphoenolpyruvate synthetase regulatory protein |
| * | * | ÷ | NC_000913 | 1833772 | 1833846 | 75 | 2 [1] | [1] 2 | ydjX | DedA family protein YdjX |
| * | * | ÷ | NC_000913 | 1978495 | 1979270 | 776 | 6 [0] | [0] 14 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 1994494 | 1994679 | 186 | 3 [1] | [1] 2 | uvrC | UvrABC excision nuclease subunit C |
| * | * | ÷ | NC_000913 | 2052482 | 2052546 | 65 | 2 [1] | [1] 2 | yeeJ/shiA | inverse autotransporter adhesin/shikimate:H(+) symporter |
| * | * | ÷ | NC_000913 | 2083735 | 2083745 | 11 | 3 [1] | [0] 2 | sbcB | exodeoxyribonuclease I |
| * | * | ÷ | NC_000913 | 2196896 | 2197019 | 124 | 2 [1] | [1] 2 | yehF | PF05406 family protein YehF |
| * | * | ÷ | NC_000913 | 2264705 | 2264716 | 12 | 2 [1] | [1] 2 | setB | sugar exporter SetB |
| * | * | ÷ | NC_000913 | 2342395 | 2342491 | 97 | 3 [1] | [1] 2 | yfaL | putative autotransporter adhesin YfaL |
| * | * | ÷ | NC_000913 | 2411769 | 2411836 | 68 | 3 [1] | [1] 2 | hxpA | hexitol phosphatase A |
| * | * | ÷ | NC_000913 | 2623553 | 2623586 | 34 | 2 [1] | [1] 2 | ppk | polyphosphate kinase |
| * | * | ÷ | NC_000913 | 2939694 | 2939720 | 27 | 2 [1] | [0] 2 | fucR | DNA‑binding transcriptional activator FucR |
| * | * | ÷ | NC_000913 | 3131480 | 3131532 | 53 | 2 [1] | [1] 2 | yghQ | putative transport protein YghQ |
| * | * | ÷ | NC_000913 | 3239585 | 3239693 | 109 | 2 [1] | [1] 2 | alx/sstT | putative membrane‑bound redox modulator Alx/serine/threonine:Na(+) symporter |
| * | * | ÷ | NC_000913 | 3423841–3424229 | 3424522–3424240 | 12–682 | 3 [1] | [1] 2 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 3477913 | 3477969 | 57 | 2 [1] | [1] 2 | slyD | FKBP‑type peptidyl‑prolyl cis‑trans isomerase SlyD |
| * | * | ÷ | NC_000913 | 3543180 | 3543312 | 133 | 2 [1] | [1] 3 | rpnA | recombination‑promoting nuclease RpnA |
| * | * | ÷ | NC_000913 | 3560808 | 3560884 | 77 | 2 [1] | [1] 2 | glpG | rhomboid protease GlpG |
| * | * | ÷ | NC_000913 | 3769348 | 3769349 | 2 | 2 [0] | [1] 2 | yibV | PF15596 family protein YibV |
| * | * | ÷ | NC_000913 | 4165711 | 4165739 | 29 | 2 [1] | [1] 2 | murI | glutamate racemase |
| * | * | ÷ | NC_000913 | 4331699 | 4331804 | 106 | 2 [1] | [0] 2 | proP | osmolyte:H(+) symporter ProP |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 382179 = | NA (NA) | 14 (1.400) | 11/294 | 0.1 | NA | noncoding (920/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382590 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 6 (0.590) | 6/298 | 0.3 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | = 1651548 | NA (NA) | 12 (1.180) | 9/298 | 0.1 | 92.3% | noncoding (706/706 nt) | IS2 | repeat region |
| ? | NC_000913 | = 1792776 | 1 (0.100) | intergenic (‑45/+33) | nlpC/btuD | NlpC/P60 family lipoprotein NlpC/vitamin B12 ABC transporter ATP binding subunit | |||||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 15 (1.480) | 13/298 | 0.0 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||