New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1651548	NA (NA)	12 (1.180)	9/298	0.1	92.3%	noncoding (706/706 nt)	IS2	repeat region
	?	NC_000913	= 1792776	1 (0.100)					intergenic (‑45/+33)	nlpC/btuD	NlpC/P60 family lipoprotein NlpC/vitamin B12 ABC transporter ATP binding subunit

GGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGG‑AAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1651388‑1651548 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GACGCTAAATTAATGCAAGAATAAAAAACAGAGGAACCGTACGGAATGCGTTTCTGCCTTATTTTGATCACAGCACTGCTTCTGGCCGGGTGTAGCCACCATAAAGCACCGCCGCCAAATGCCAGACTTTCTGATTCGATTACCGTTATTGCCGGTTTGAACGACCAGCTACAAAGCTGGCATG  <  NC_000913/1792776‑1792593                                                                                                                                                                                                                                                                                                                                                            GGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGG‑AAATATAGGGGCAAATCCAGACGCCAAATTAATGCAAGAATAAAAAACAGAGGAACCGTACGGAATGCGTTTCTGCCTTATTTTGATCACAGCACTGCTTCTGGCCGGn                                                                                                <  1:152456/251‑2         gtCAGCGAAGAACATTGCAGAGGCGTTCGAGCATTATAACGCATGGCATACACAGAGTGCGCTGGGTTATAGCTCGCCACGGGAATATCTGCCGCAGCGAGCTTGTACTGGGATAAGTGATACCAGATGTCTGG‑AAATATAGGGGCAAATCCAGACGCTAAATTCATGCAAGACTAAAACCCAGAGGCACCGTACGGAATGCGTTTCTGCCTTATTTTGATCACAGCACTGCTTCTGGCCGGGTGTAGCC                                                                                         >  1:46131/3‑250                    ACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGG‑AAATATAGGGGCAAATCCAGACGCTAAATTAATGCAAGAATAAAAAACAGAGGAACCGTACGGAATGCGTTTCTGCCTTATTTTGATCACAGCACTGCTTCTGGCCGGGTGTAGCCACCATAAAGCAC                                                                             >  1:74117/1‑251                              GGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATTGCTCGCCACGGGAATATTTGCGGCAGCGGGCTTGGAATGGGTTAAGTGATAACAGATGTCTGG‑AAATATAGGGGCAAATCCAGACGCTAAATTAATGCAAGAATAAAAAACAGAGGAACCGTACGGAAT                                                                                                                                           >  1:133566/1‑179                                                           CGCATGGTGCGCTGGGTTACCGATCGCCACGGGAATATCGGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGT‑TGGTAAATATAGGGGCAAATCCAGACGCTAAAGTAATGCAAGAATAAAAAACAGAGGATCCGTACG                                                                                                                                               <  1:2900/146‑1                                                                         GGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGG‑AAATATAGGGGCAAATCCAGACGCTAAATTAATGCAAGAATAAAAAACAGAGGAACCGTACGGAATGCGTTTCTGCC                                                                                                                                >  1:13073/1‑147                                                                         GGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTAGTAATGGGTTACGTGATAACAGATGTCTGG‑AAATATAGGGGCAAATCCAGACGCTAAATTAATGCAAGAATAACAAACAGAGGAGCCGTACGGAATGCGTTTCTGCCTTATTTTGATCACCGCACTGCTTCTGGCCGGGTGTAG                                                                                           >  1:148278/1‑184                                                                          GTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGG‑AAATATAGGGGCAAATCCAGACGCTCAATTAATGCAAGAATAAAA                                                                                                                                                                >  1:19125/1‑114                                                                                gcgCGCCACGAGAATATCTGCGGCAGCGGGCTTGTAATGGGNTAAGTGATAANAGANNTCTGN‑ANANAGAGGGGGAAATCGAGACGCTAAATTAATNCAAGAATAAAAAACAGAGGAAGCNNACNNNATNNGTTTC                                                                                                                                    <  2:191827/133‑1                                                                                GCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTATGG‑AAATATAAGGGCAAATCCAGACGCTAAATTAATGCACGAATACACACAAGAGGAACCGTACGGACTGCGTTTC                                                                                                                                    >  1:191827/1‑136                                                                                                             GCTTGTAATGGGTTAAGTGATAACAGCTGTCTGG‑AAATATAGGGGCAAATCCAGACGCTAAATTAATGCAAGAATAAAAAACAGAGGAACCGTACGGAATGCGTTTCTGCCTTATTTTGATCACAGCACTGCTTCTGGCCGGGTGTAGCCACCATAAAGCACCGCCGCCAAATGCCAGACTTTCTGATTCGATTACCGTTATTGCCGGTTTGAACGACCAGCTACAAAGCTGGCATG  >  1:202810/1‑237                                                                                                                                             GG‑AAATATAGGGGCAAATCCAGACGCTAAATTAATGCAAGAATAAAAAACAGAGGAACCGTACGGAATGAGTTTCTGCCTTATTTTGATCACAGCACTGCTTCTGGCCGGGTGTAGCCACCATAAAG                                                                                >  1:209581/1‑127                                                                                                                                                                                                                                                                                                                                                            GGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGG‑AAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1651388‑1651548 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GACGCTAAATTAATGCAAGAATAAAAAACAGAGGAACCGTACGGAATGCGTTTCTGCCTTATTTTGATCACAGCACTGCTTCTGGCCGGGTGTAGCCACCATAAAGCACCGCCGCCAAATGCCAGACTTTCTGATTCGATTACCGTTATTGCCGGTTTGAACGACCAGCTACAAAGCTGGCATG  <  NC_000913/1792776‑1792593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.