New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1397238NA (NA)6 (0.590) 6/298 0.3 100% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 = 1978494 0 (0.000)intergenic (‑297/+24) flhD/insB5 DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB

CGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTAT  >  NC_000913/1397008‑1397477
                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                               
cGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTg                                                                                                                                                                                                                              >  1:224259/1‑250 (MQ=35)
                                                                   tGGGAGAGATCCCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGCTCTAAATAGGCTGAGTCAAGGCATTTACGGGAGAAAAAAGCGGCTCAAACATGAAGAAACGAAATGACTGAGTCAGCCTAGAAGAATTTCCGCGCTTAGTCGCACCGTCCCTAACTAAGCAATGCGGTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTg                                                                                                                                                                               <  1:228951/230‑1 (MQ=17)
                                                                                            ggATAACGCCTTAAATGGCGAAGAAACGATCTAAATACGCTGATTCAAGGCATTTACGGGAGCAAAAATCGGCACAAACATGCAGAACTGAAATGACTGAGAAAGCCGAGACGCATTTCCCCGATTATTCGCCACTTACCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGACATGGAATTGTTACGTTTAGGTAACAAGAAATTTGTCTGc                                                                                                                                 >  1:188595/1‑251 (MQ=25)
                                                                                                                                                          aaaaaaTCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTGCCCCGCTTATTCGCACCTTCCCGAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGTTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTGTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGt                                                                                             <  1:228095/225‑1 (MQ=255)
                                                                                                                                                                   gCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCACTAACTAATCAATGCGCTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTAtt                                                                                                                                                                >  1:138733/1‑149 (MQ=255)
                                                                                                                                                                                                                              gCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGGGAGGTTTTCAGAGCCGACCACGGCGAAATGTCATGGTATTGTTACGTTTAGGTAAAAAGAAATTTGTCTGCACACGGATTACATCATAATTATGGCGAACCTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCTTTTTTGCGGCGTCGGTTGGGACTCGCGCGACCCTCGGCGGCCTtat  >  1:135662/1‑248 (MQ=255)
                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                               
CGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAACTAATCAATGCGTTGATTGTAAATCCAGCTAAGAGGTGAGGTTTTCAGAGCAGACAACGGTGAAATGTCATGGTATTGTTACGTTTAGGTAACAAGAAATTTGTCTGCACAAGGATTACATCATGATTATGGCGAAACTGAAGTCAGCGAAAGGGAAGAAATTTCTCTTTGGTTTGTTGGCGGTTTTCATTATTGCGGCGTCGGTTGTGACTCGCGCGACCATCGGCGGCGTTAT  >  NC_000913/1397008‑1397477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.