| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,167,670 | G→A | P17S (CCT→TCT) | ygiS ← | putative deoxycholate binding periplasmic protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,167,670 | 0 | G | A | 92.3% | 28.0 / ‑4.5 | 13 | P17S (CCT→TCT) | ygiS | putative deoxycholate binding periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (5/7); total (5/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.91e-01 | |||||||||||
AAAATATAGCGCTTGCCGCCGTCCAGTATCTCCCAGCGTTCAGCCTGAGCGGGCTGCACCTGGCCTTCACCGTCCATCCATACCAGACCTTCAAACAGATCCAGCACAATCTGCGCGGCAGTATTCTCCTCCACCTTTTGCGGGTCGAGCGTACCTGGGTCGCTATGATTGTTGTAACGAAAGACTTGTTGCGGGGCGAGCGGTGTGTTGGCGGGAACGTCAGCAGCGTAGAGAGGAGCCGCACTTACCAGGCTGACCAGCCATAATAAATTTCGCGTATACATGGTATTCCTTACCGGAGAAATTATAAGCCCAACAACAATACGCCTGTGGCATTGTTCGCTCAAACTTATCGCGAGTGATTTGGCTCACACTCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGG > NC_000913/3167435‑3167857 | aaaaTATAGCGCTTGCCGCCGTCCAGTATCTCCCAGCGTTCAGCCTGAGCGGGCTGCACCTGGCCTTCACCGTCCATCCAGACCAGACCTTCAAACAGATCCAGCACTATCTGCGCGGCATTATTCTCCTCCACCTTTGGCGGGTCGAGCGTACCGGGGTGGCTATGAGTGTTGTAACGAAAGACTTGTTGCGGGGCGAGCGGTGTGTTGGCGGGAACGTCAGCAGCGTAGAGAGAAGCCGCACTTACCAg < 1:178535/251‑1 (MQ=255) aGCGCTTGCCGCCGTCCAGTATCTCCCAGCGTTCAGCCTGAGCGGGCTGCACCTGGCCTTCACCGTCCATCCATACCAGACCTTCAAACAGATCCAGCACAATCTGCGCGGCAGTATTCTCCTCCACCTTTGGCGGGTCGAGCGTACCTGGGTCGCTATGATTGTTGTAACGAAAGACTTGTTGCGGGGCGAGCGGTGTGTTGGTGGGAACGTCAGCAGCGTAGAGAGAAGCCGCACTTACCAGGCTGAcc < 1:133136/251‑1 (MQ=255) ccTGAGCGGGCTGCACCTGGCCTTCACCGTCCATCCATACCAGACCTTCAAACAGATCCAGCACAATCTGCGCGGCAGTATTCTCCTCCACCTTTTGCGGGTCGAGCGTACCTGGGTCGCTATGATTGTTGTAACGAAAGACTTGTTGCGGGGCGAGCGGTGTGTTGGCGGGAACGTCAGCATCGTAGAGAGAAGCCGCACTTACCAGGc < 1:212403/210‑1 (MQ=255) gCACAATCTGCGCGGCAGTATTCTCCTCTTCCTTTTGCGGGTCGGTTGGTCCTGGGTAGCTATGATTGTCGTATCGAAAGACTTTATGCTGGGCGACCGGTGTGCTTGCGGGAACGTCAGCAGCGTAGAGAGAAGCCGCACTTAcn < 1:24984/146‑2 (MQ=255) gcgcGGCAGTATTCTCCTCCACCTTTTGCGGGTCGAGAGTACCTGGGTCGCTATGATTGTTGCAACGACAGACTTGTTGCGGGGCGCGCGGTGTGTTGGCGGGACCGTACGCAGCGTAGAGAGAAGCCGCCCTTACCCGGCTGACCAGCCCTAATAAATTTcg > 1:238493/1‑163 (MQ=255) cGGGTCGAGCGTACCTGGGTCGCTATGATTGTTTTAACGAAAGACTTGTTGCGGGGCGAGCGGTGTGTTGGCGGGAACGTCAGCAGCGTAGAGAGGAGCCGCACTTCCCAGGCTGACCAGCCATAATAAATTTCTCGTATACATGGTATTCCTTACCGGAGAAATTATAAGCCCAACAACAATACGCCTGTGGCATTGTTCGCTCAAACTCATCGCGAGTGATTTGGCTcac < 1:133567/232‑1 (MQ=255) gTCGAGCGTACCTGGGTCGCTATGATTGTTGTAACGAAAGACTTGTTGCGGGGCGAGAGGTGTGTTGGCGGGAACGGCAGCAGCGTAGAGAGAAGCCGCACTTACCAGGCTGACCAGCCATAATAAATTTCTCGTATACAGGGTATTCCTTACCGGAGAAATTATAAGCCcaa > 1:193718/1‑173 (MQ=255) gTCGCTATGATTGTTGTAACGGAAGACGTGTTGCGGGGCGAGCGGTGTGTTGGGGGGAACGTCAGCAGCGTAGAGAGAAGCCGCACTTACCAGGc < 1:100184/95‑1 (MQ=255) tATGATTGTTGTAACGAAAGACTTGTTGCGGGGCGAGCGGTGTGTTGGCGGGAACGTCAGCAGCGTAGAGAGAAGCCGCACTTACCAGGCTGACCAGCCATAATAAATTTCGCGTATACATGGTATTCCTTACNgggnnnnntann > 2:150979/1‑136 (MQ=255) tATGATTGTTGTAACGAAAGACTTGTTGCGGGGCGAGCGGTGTGTTGGCGGGAACGTCAGCAGCGTAGAGAGAAGCCGCACTTACCAGGCTGACCAGCCATAATAAATTTCGCGTATACATGGTATTCCTTACCGGAGAAATTATAAGCCCAACAACAATACGCCTGTGGCATTGTTCGCTCAAACTTATCGCGAGTGATTTGGCTCACACTCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTcn < 1:150979/248‑2 (MQ=255) gtAACGAAAGACTTGTTGCGGGGCGAGCGGAGTGTTGGCGGGAACGTCACAAGCGTAGAGGCAAGCCGCACTTACCAGGCTGACCAGCCATAATCAATTTAGAGTATACATGGTATTCCTTACCGGGGACATTATAAGCCCCACCACAATACGCCTGTGGCATTGTTCGCTCAACCTTATCGCGAGTGATTTGGCTCACACTCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACga > 1:232377/1‑249 (MQ=255) aaGACTTGTTGCGGGGCGAGCGGTGTGTTGGCGGGAACGTCAGCAGCGTAGAGAGAAGCCGCACTTACCAGGCTGACCAGCCATAATAAATTTCGCGTATACATGGTATTCCTTACCGGCGAAATTATAAg > 1:207921/1‑131 (MQ=255) gtgtgtTGGCGGGAACGTCAGCAGCGTAGAGAGAAGCCGCACTTACCAGGCTGACCAGCCATAATAAATTTCGCGTATACATGGTATTCCTTACCGGAGAAATTATAAGc < 1:42892/110‑1 (MQ=255) | AAAATATAGCGCTTGCCGCCGTCCAGTATCTCCCAGCGTTCAGCCTGAGCGGGCTGCACCTGGCCTTCACCGTCCATCCATACCAGACCTTCAAACAGATCCAGCACAATCTGCGCGGCAGTATTCTCCTCCACCTTTTGCGGGTCGAGCGTACCTGGGTCGCTATGATTGTTGTAACGAAAGACTTGTTGCGGGGCGAGCGGTGTGTTGGCGGGAACGTCAGCAGCGTAGAGAGGAGCCGCACTTACCAGGCTGACCAGCCATAATAAATTTCGCGTATACATGGTATTCCTTACCGGAGAAATTATAAGCCCAACAACAATACGCCTGTGGCATTGTTCGCTCAAACTTATCGCGAGTGATTTGGCTCACACTCCGGTAAAGAAAAAAGCGAGTTGCCCCCGCTTTTCCATTAATTAACGG > NC_000913/3167435‑3167857 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |