| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 719,561 | G→A | A300A (GCC→GCT) | speF ← | inducible ornithine decarboxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 719,561 | 0 | G | A | 88.9% | 12.9 / NA | 9 | A300A (GCC→GCT) | speF | inducible ornithine decarboxylase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (7/1); minor base C (1/0); total (8/1) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.95e-01 | |||||||||||
CCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAGGCGGAAAGGACGAGCCTCTTTTGCCCGCTGCGGTGCGACTTCCGCGATCAGCTCACGCAGGTAACTTTCTTCAAAACAGTGCGCATCAATGCCACCGATAAAGCCATACGGGTTAC > NC_000913/719385‑719724 | ncAGCCTGTTGTTTATGCACAGATTGCGTAACCAGCTTACCCGGATCGTTCTCATTAAGATCCAGCAAAAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGCACCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGAGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAg > 1:50630/2‑220 (MQ=255) aGATTGCGTAACCAGAATACCCGGATCGTTCTCATTATGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGAGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAGGCGGAAAGGACGAGCCTCTTTTGCCCGCTGCGGTGCGACTTCcgc < 1:224834/249‑1 (MQ=255) nccAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACCGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGAGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAGGCGGAAAGGACGAGCCTCTTTTGCCCGCTGCGGTGCGACTTCCGCGATCAGCTCACg > 1:54759/2‑251 (MQ=255) ttCTCATTAAGCTCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAACCTGTTCATAGCCGACCCATGCTGAGTCCAACAGGATGTAGTCACCCCGATGACCAATTTTATCCACCACTTGGCGAGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGACTCACAGCGAGGCGGAAAGTACGAGCCTCTTTTGcc > 1:133932/1‑201 (MQ=255) catcGGAATAACCTGTTCATAGCCGACCCATGATGAGTCAAACAGGATGTAGTCAAACCGATGACCAATTTTATCCACCACTTGGAGAGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAGGCGGAAAGGACGAGCGTCTTTTGCCCGCTGCGGTGCGACTTCCGCGATCAGCTCACGCAGGTAACTTTCTTCAAAACAGTGCGCATCAATGCCACCGATAAAGCCATACGGGTTAc > 1:95294/1‑251 (MQ=255) gCCGACCCATGCTGAGTCAAACAGGATGTAGCCACACAGATGACCAATTTTATCCACCCCTTGGCGAGCGTTATAAATCGTACCGTCGTAGGTGc > 1:217792/1‑95 (MQ=255) gCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGAGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAGGCGGAAAGGACGAGCCTCTTTTGCCCGCTGCGGTGCGACTTCCGCGATCAGCTCACGCAGGTAACTTTCTTCAAAACAGTGCGCATCAATGCCACCGATAAAg > 1:195582/1‑207 (MQ=255) naGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGAGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAGGCGGAAAGGACGAGCCTCTTTTg > 1:65203/2‑124 (MQ=255) gAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGCGCGTTATAAATCGTACCGTCGTAGGTGCCTAACt > 1:166359/1‑88 (MQ=255) | CCAGCCTGTTGTTTATGCACAGATTGCGTAACCAGAATACCCGGATCGTTCTCATTAAGATCCAGCAACAGCGGCGAACAGTCCGCCATCATCGGAATAAACTGTTCATAGCCGACCCATGCTGAGTCAAACAGGATGTAGTCACACAGATGACCAATTTTATCCACCACTTGGCGGGCGTTATAAATCGTACCGTCGTAGGTGCCTAACTGAATCACAGCGAGGCGGAAAGGACGAGCCTCTTTTGCCCGCTGCGGTGCGACTTCCGCGATCAGCTCACGCAGGTAACTTTCTTCAAAACAGTGCGCATCAATGCCACCGATAAAGCCATACGGGTTAC > NC_000913/719385‑719724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |