| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,142,842 | G→A | P50S (CCG→TCG) | hybC ← | hydrogenase 2 large subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,142,842 | 0 | G | A | 90.9% | 25.8 / NA | 11 | P50S (CCG→TCG) | hybC | hydrogenase 2 large subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (5/5); minor base C (1/0); total (6/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GATGTCCACCCAGTCCAGCGCCGAAAGCTGATAGAAATGAACAATATGGTCATGCGTGGTGTGCGCAGCCAGAATGATGTTACGGATGTATTGCGCGTTAACCGGAACGTCGATATTCAGCGCACTTTCTGCCGCACGAACGGAAGACAGCGCGTGAGTGGTAGTACATACGCCACAGATACGTTGCACAATCATCCATGCATCGCGCGGATCGCGGTTTTTCACGATCTCTTCCATGCCGCGCCACATGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACG > NC_000913/3142633‑3143054 | gATGTCCACCCAGTCCAGCGCCGAAAGCTGATAGAAATGAACAATATGGTCATGCGTGATGTGCGCAGCCAGAATGATGTTACGGATGTATTGCGCGTTAACCGGAACGTCGATATTCAGCGCACTTTCTGCCGCACGAACGGAAGACAGCGCGTGAGTGGTAGTACATACGCCACAGATACGTTGCACAATCATCCATGCATCGCGCGAATCGCGGTTTTTcn < 1:76752/224‑2 (MQ=255) cGAAAGCTGATAGAAATGAACAATATGGTCATGCGTGATGTGCGCAGCCAGAATGATGTTACGGATGTATTGCGCGTTAACCGGAACGTAGATATTCAGCGCACTTTCTGCCGCACGAACGGAAGACAGCGCGTGAGTGGTAGTACATACGCCACAGATACGTTGCACAATCATCCATGCATCGCGCGAATCGCGGTTTTTCACGATCTCTTCCATGCCGCGCCACATGGTACCGGAAGCCCATGCTTTCg > 1:121421/1‑251 (MQ=255) aattaactatatTGTCATGCGTGATGTGCGTAGCCAGAATGATGTTACGGATGTAGTGCGCGTTAACCGGAACGTCTATAGTCAGCACGCTTTCTGCCGCACGAGCGGAAGACAGCGCGTGAGTGGTAGTACATCCGCCACATATACGTTGCACAATCATCCAAGCGGCGCGCGAATCGCGGTGTTTCACGAt < 1:228634/185‑1 (MQ=255) cGATATTCAGCGCACTTTCTGCCGCCCGCACCGAAGACAGCGCGTGAGTGGCAGTACATACGCCACAGCTACGTTGCACAATCATCCATGCATCGCGCGCATCGCGGTTTTTCACGATCTCTTCCATGCCGCGCCACATGGTACCGGACGCCCATGCTTTCGCAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGCAATTCTCTGTCTCATGCtt > 1:79761/1‑251 (MQ=255) cTTTCTGCCGCACGAACGGAAGACAGCGCGTGAGTGGTAGTACATACGCCACAGATACGTTGCACAAGCATCCATGCATCGCGCGAATCGCGGTTTTTCACGAtc < 1:97810/105‑1 (MQ=255) cGCACGAACGGAAGACATGGCGTGAGTGGTAGTACATACGCCACAGGTGCGTTGCACAATCATCCATGCATCGCGCGAATCGCGGTTTTTCACGATCTCTTCCATGCCGCGCCACATCGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTc < 1:101529/156‑1 (MQ=255) gAAGACAGCGCGTGAGTGGTAGTACATACGCCACAGATACGTTGCACAATCATCCATGCATCGCGCGAATCGCGGTTTTTCACGATCTCTTCCATGCCGCGCCACATGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGAtt > 1:70480/1‑150 (MQ=255) gcgcGTGAGTGGTAGTACATACGCCACAGATACGTTGCACAATCATCCATGCATCGCGCGAATCGCGGTTTTTCACGATCTCTTCCATGCCGCGCCACATGGTACCGGAAGCCCATGCTTTCGAAACGACTCCATTTTCGATTTCGCAATCGATGCGTAAAt > 1:103115/1‑162 (MQ=255) ntagtaCATACGCCACAGATACGTTGCACAATCATCCATGCATCGCGCGACTCGAGGTTTTTCACGATCTCTTCCATGCCGCGCCACATGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGCTGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCCTGCTTTGc > 1:48543/2‑204 (MQ=255) gCCACAGATACGTTGCACAATCATCCATGCATCGCGCGAATCGCGGTTTTTCACGATCTCTTCCATGCCGCGCCACATGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCAGGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGt < 1:15706/246‑1 (MQ=255) gCCACAGATACGTTGCACAATCATCCATGCATAGCGCGAATCGCGGTTTTTCACGATATCTTCCATGCCGCGCAACATGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAAGGCACCTCAATACGGGTTAGCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATGATGATCGTTTTGTTTTAAAGGAGGAAGGATCGGCAGTAGACg > 1:111851/1‑251 (MQ=255) | GATGTCCACCCAGTCCAGCGCCGAAAGCTGATAGAAATGAACAATATGGTCATGCGTGGTGTGCGCAGCCAGAATGATGTTACGGATGTATTGCGCGTTAACCGGAACGTCGATATTCAGCGCACTTTCTGCCGCACGAACGGAAGACAGCGCGTGAGTGGTAGTACATACGCCACAGATACGTTGCACAATCATCCATGCATCGCGCGGATCGCGGTTTTTCACGATCTCTTCCATGCCGCGCCACATGGTACCGGAAGCCCATGCTTTCGAAACGACGCCATTTTCGATTTCGCAATCGATGCGTAAATGCCCCTCAATACGGGTTACCGGATCAATAGTAATTCTCTGGCTCATGCTTTGCTCGCCTCATGACGATTATGATCGTTTTGTTTTAAAGGAGGAAGTATCGGCAGTAGACG > NC_000913/3142633‑3143054 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |