| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 334,871 | C→T | G51D (GGT→GAT) | yahC ← | uncharacterized protein YahC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 334,871 | 0 | C | T | 91.7% | 24.2 / ‑5.9 | 12 | G51D (GGT→GAT) | yahC | uncharacterized protein YahC |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (7/4); total (7/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AACAGCGTCATGCCGAGAAAGCCACCGGGAATAAAGGACAGTAACCAGAAACGCCCTTGCCAGACCACTACCGCCGAGAAGGGTACGGTAGTAATTACGCTCGCCCAGAACGCGGACAGTCCACTTACAGAGGCCAGCCAACCAGCAGTCAGCGCGGCGAAAAACGCCCACACCATCCCGGAATAATTAACCGCCAGACTTCTGATAAACCCCGATTTACCGCCGCCTGCGGCATAAAAACTGCAAAAGGCGACGAAGCCAATGGTTCCTAATAATTCCCATCCTTGAGAGAGCCCGACATGTGAAGACACTAACTGCCAAAGCCCTGCACAAATACCGACGGTGACACCCGTTGCCGTGAGTCCGTTCATCTTGTTCCCCTCTGGTTAGACATGGACGAAAGCTACTCTTACATGTGCAGACTATAGAGAAATAAAACCTGATTGAGTGAAAGGGTATCG > NC_000913/334652‑335112 | aaCAGCGTCATGCGGAGAAAGCCACCGGGAAAAAAGGACAGTAACCAGAAACGCCCTTGCCAGACCACGACCGCCGAGAAGGGTACGGTAGTAATTACGCTCGCCCAGAACGCGGACAGTCCACTTACAGAGGCCAGCCAACCAGCAGGCAGAGCGGCGAAAAACGCCCACACCAACCGGGAAGAATTATCCGCCAGACGTCTGATAAACCCCGATTTATCGCCGCCTGCGGCATAAAAACTGCAAAAGGc < 1:219214/251‑1 (MQ=255) aCCAGAAACGCCCTTGCCAGACCACTACCGCCGAGAAGGGTACGGTAGTAATTACGCTCGCCCAGAACGCGGCCAGTCCACTTACAGAGGCCAGCCAACCAGCAGTCAGCGCGGCGAAAAACGCCCACACCATCCCGGAATACTTAACCGCCAGACTTCTGATAAACCCCGATTTATCGCCGCCTGCGGCATAAAAACTGCAAAAGGCGACGAAGCCAATGGTTCCTAATAATTCCCATCCTTGAGAGAGc > 1:44369/1‑251 (MQ=255) gtaATTACGCTCGCCCAGAACGCGGACAGTCCACTTACAGAGGCCAGCCAACCAGCAGTCAGCGCGGCGAAAAACGCCCACACCATCCCGGAATAATTAACCGCCAGACTTCTGATAAACCCCGATTTATCGCCGCCTGCGGCATAAAAACTGCAAAAGGCGACGAAGCCAATGGTTCCTAATAATTCCCATCCTTGAGAGAGCCCGACATGTGAAGACACTAACTGCCAAAGCCCTGCACAAATACCGAc > 1:7953/1‑251 (MQ=255) cgGACAGTCCACTTACAGAGGCCAGCCAACCAGCAGTCAGCGCGGCGAAAAACGCCCACACCATCCCGGAATAATTAACCGCCAGACTTCTGATAAACCCCGATTTATCGCCGCCTGCGGCATAAAAACTGCAAAAGGCGACGAAGCCAATGGTTCCTAATAATTCCCATCCTTGAGAGAGCCCGACATGTGAAGACACTAACTGCCAAAGCCCTGCACAAATACCGACGGTGac > 1:59815/1‑235 (MQ=255) gccagccaACCAGCAGTCAGCGCGGCGAAAAACGCCCACACCATCCCGGAATAATTAACCGCCAGACTTCTGATAAACCCCGATTTATCGCCGCCTGCGGCATAAAAACTGCAAAAGGCGACGAAGCCAATGGTTCCTAATAATGCCCATCCTTGAGAGAGCCCGa < 1:9082/166‑1 (MQ=255) cagccaACCAGCAGTCAGCGCGGCGAAACACGCCCACACCATCCCGGAATAATTAACCGCCAGACTTCTGATAAACCCCGATTTATCGCCGCCTGCGGCATCAAAACTGCAAAAGGCGACGAAGCCAATGGTTNCTANNNNNTcnn > 2:157796/1‑144 (MQ=255) cagccaACCACAAGTCAGCGCGGCGAAAAACGCCCACACCATCCCGAAATAATTAACCGCCAGACTTCTGATAAACCCCGATTTATCGCCGCCTGCGGCATAAAAACTGCAAAAGGCGACGAAGCCAATGGTTCCTAATAATTCCCATCCTTGAGAGAGCCCGACATGTGAAGACACTAACTgn < 1:157796/184‑2 (MQ=255) cgacgAAAAACGCCCACACCATCCCGGAATAATTAACCGCCAGACTTCTGATAAACCCCGATTTATCGCCGCCTGCGGCATAAAAACTGCAAAAGGCGACGAAGCCAATGGTTCCTAATAATTCCCATCCTTGAGAGAGCCCGACAGGTGAAGACACTAACTGCCAAAGCCCTGCACAAATACCGACGGTGACACCCGGTGCCGTGAGTCCGTTCATCt < 1:90400/216‑1 (MQ=255) gcgAAAAACGCCCACACCATCCCGGAATAATTAACCGCCAGACTTCTGATAAACCCCGATTTATAGCCGCCTGCGGCATAAAAACTGCAAAAGGCGACGACGCCAATGATTCATACTAATTCACATCCTTGAGAGAGCCCGACATGTGAAGACACTAACTGCCAAAGCCCTGCACACATACCGACGGTGACACCCGTTGcc > 1:35221/1‑201 (MQ=255) naaaaaCGCCCACACCATCCCGGAATAATTAACCGCCAGACTTCTGATAAACCCCGATTTATCGCCGCCTGCGGCATaa > 1:156216/2‑79 (MQ=255) gAAAAACGCCCACCCCACCCCGGAATAACTATCCGCCAGACTTCTGATAAACCCCGATTTACCGCCGCCTGCGGCATaa < 2:156216/79‑1 (MQ=255) cccGATTTATCGCCGCCTGCGGCATAAAAACTGCAAAAGGCGACGAAGCCAATGGTTCCTAATAATTCCCATCCTTGAGAGAGCCCGACATGTGAAGACACTAACTGCCAAAGCCCTGCACAAATACCGACGGTGACACCCGTTGCCGTGAGTCCGTTCATCTTGTTCCCCTCTGGTTAGACATGGACGAAAGCTACTCTTACATGTGCAGACTATAGAGAAATAAAACCTGATTGAGTGAAAGGGTATCg > 1:92964/1‑251 (MQ=255) | AACAGCGTCATGCCGAGAAAGCCACCGGGAATAAAGGACAGTAACCAGAAACGCCCTTGCCAGACCACTACCGCCGAGAAGGGTACGGTAGTAATTACGCTCGCCCAGAACGCGGACAGTCCACTTACAGAGGCCAGCCAACCAGCAGTCAGCGCGGCGAAAAACGCCCACACCATCCCGGAATAATTAACCGCCAGACTTCTGATAAACCCCGATTTACCGCCGCCTGCGGCATAAAAACTGCAAAAGGCGACGAAGCCAATGGTTCCTAATAATTCCCATCCTTGAGAGAGCCCGACATGTGAAGACACTAACTGCCAAAGCCCTGCACAAATACCGACGGTGACACCCGTTGCCGTGAGTCCGTTCATCTTGTTCCCCTCTGGTTAGACATGGACGAAAGCTACTCTTACATGTGCAGACTATAGAGAAATAAAACCTGATTGAGTGAAAGGGTATCG > NC_000913/334652‑335112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |