mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 66 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 579,811 | 0 | C | T | 59.1% | 5.2 / 13.5 | 22 | intergenic (‑217/‑69) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 578,427 | 0 | G | C | 57.1% | ‑6.1 / 13.4 | 14 | T107T (ACG→ACC) R34P (CGG→CCG) | rzpD rzoD | putative prophage endopeptidase RzpD putative prophage lysis lipoprotein RzoD |
| * | NC_000913 | 1,429,759 | 0 | G | A | 57.1% | ‑5.6 / 12.8 | 14 | R237R (CGG→CGA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,816 | 0 | C | T | 56.2% | ‑4.9 / 13.6 | 16 | S256S (AGC→AGT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,820 | 0 | A | G | 56.2% | 2.0 / 10.4 | 16 | S258G (AGT→GGT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,823 | 0 | A | C | 56.2% | ‑5.9 / 12.0 | 16 | S259R (AGT→CGT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,692 | 0 | T | A | 55.6% | ‑2.7 / 19.8 | 18 | L215Q (CTA→CAA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,146 | 0 | A | G | 55.0% | 2.3 / 14.7 | 20 | intergenic (‑253/+38) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,634,676 | 0 | A | G | 53.3% | ‑5.9 / 10.1 | 15 | D70D (GAT→GAC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 579,717 | 0 | A | C | 52.9% | ‑5.8 / 17.7 | 17 | intergenic (‑123/‑163) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 1,429,682 | 0 | T | G | 52.6% | 4.5 / 18.6 | 20 | S212A (TCA→GCA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 566,597 | 0 | T | C | 52.4% | 2.8 / 17.2 | 22 | intergenic (‑619/‑87) | intD/renD | putative integrase/protein RenD |
| * | NC_000913 | 578,605 | 0 | T | G | 50.0% | ‑6.3 / 19.7 | 20 | K97Q (AAA→CAA) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 578,811 | 0 | T | G | 50.0% | ‑1.1 / 13.3 | 18 | Q28P (CAG→CCG) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 579,540 | 0 | T | C | 50.0% | ‑1.8 / 11.8 | 14 | N19D (AAC→GAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,632 | 0 | G | A | 50.0% | ‑6.5 / 14.5 | 16 | S195N (AGC→AAC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,732 | 0 | G | A | 50.0% | ‑6.5 / 11.8 | 14 | K228K (AAG→AAA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,747 | 0 | G | C | 50.0% | ‑2.6 / 18.1 | 14 | A233A (GCG→GCC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,750 | 0 | C | T | 50.0% | ‑5.2 / 12.1 | 14 | T234T (ACC→ACT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,753 | 0 | G | A | 50.0% | ‑4.3 / 11.1 | 14 | S235S (TCG→TCA) | stfR | putative prophage side tail fiber protein StfR |