| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,594,834 | G→A | T342T (ACC→ACT) | tmcA ← | tRNA(Met) cytidine acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,594,834 | 0 | G | A | 87.5% | 10.1 / ‑5.9 | 8 | T342T (ACC→ACT) | tmcA | tRNA(Met) cytidine acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (4/3); minor base C (0/1); total (4/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAGCGGCGAAGTCCGATAGTGCGCACCAGACAAGAGCTGATAAACCTTTAACGGCGTTTCTGGATCGCTTTGCCATAACGTCTGTTCAAATGCGGAAATGACAATATTGCCTTGTGGTGTATGGGTGAAGTTTTCATCGTCAAAAACCAGTGCCTCGCTGACCATTTTTTCCAGCGGGCATCCCTGCGCCCAGCGGATCGGCTGTTGCAGTTCAAAACGGTGTAAATGCGGAAAGCGAGCGCAAAATTTCAGCAAAAAACCACGTCCGGTGCCTTCGTAGCCCTGCACCGTAGTGGTTAACAACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGAC > NC_000913/2594711‑2595079 | cAGCGGCGAAGTCCGATAGTGCGCCCCAGACAAGAGCTGATAAACCTGTAACGGCGTTTCTGGATTGCTTTGCCATAACGTCTGTTCAAATGCGGAAATGACAATATTGCCTTGTGGTGTATGAGTGAAGTTTTCATCGTCAAAAACCAGTGc < 1:22848/153‑1 (MQ=255) ccGATAGTGCGCACCAGACAAGAGCTGATAAACCTTTAACGGCGTTTCTGGATCGCTTTGCCATAACGTCTGTTCAAATGCGGAAATGTCAATATTGCCTTGTGGTGTATGAGTGAAGTTTTCATCGTCAAAAACCAGTGCCTCGCTGACCATTTTTTCCAGCGGGCATCCCTGCGCCCAGCGGATCGGCTGTTGCAGTTCAAAACCGTGTAACTGCGGAAAGCGAGCGCCAAATTTCAGCAAAAAACCAc > 1:107350/1‑251 (MQ=255) aCCAGACAAGAGCTGATAAACCTTTAACGGCGTTTCTGGATCGCTTTGCCATAACGTCTGTTCAAATGCGGAAATGACAATATTGCCTTGTGGTGTATGAGTGAAGTATTCATCGTCAAAAACCAGTGCCTCGCTGACCATTTTTTCCAGCGGGCATCCCTGCGCCCAGCGGATCGGCTGTTGCAATTCAAAAAGGGGTAAATGCGGAAAGCGAGCGCAAAATTTCAGCAAAAAACCAAGTCAGGTGCCtt > 1:217951/1‑251 (MQ=255) ggATCGCTTTGCCATAACGTCTGTTCAAATGCGGAAATGACAATATTGCCTTGTGGTGTATGAGTGAAGTTTTCATCGTCCCAAACCAGTGCCTAGCTGACCCTTTTTTCCAGCGGGCATCCCTGCGCCCAGCGGATCGGCTGTTGCAGTTCAAAACGGTGTAAATGCGGAAAGCGAGCGCAAAATTTCAGCAAACAACCACGTCCGGTGCCTTCGTAGCCCTGCACCGTAGTGGTTAACAACGTTCGAgg > 1:228710/1‑251 (MQ=255) aCGTCTGTTCAAATGCGGAAATGACAATATTGCCTTGTGGTGTATGAGTGAAGTTTTCATCGTCAAAAACCAGTGCCTCGc < 1:134826/81‑1 (MQ=255) aCGTCNGTNNAANNGCGNAACTGACAATATTGCCTTGTGGTGTATGAGTGAAGntn > 2:134826/1‑55 (MQ=255) naanTGCGGNAATGNCAATATTGCCTTGTGNTGTATTCGTGAACTTTTCGNNGNCGAAGNCCAGt < 2:96472/64‑1 (MQ=255) gtATGAGTGAAGTTTTCATTGTCAAAAACCAGTGCCTCGCTGACCATTTTTTCCAGCGGGCATCCCTGCGCCCAGCGGATCGGCTGTTGCAGTTCAAAACGGTGTAAATGCGGAAAGCGAGCGCAAAATTTCAGCAAAAAACCACGTCCGGTGCCTTCGTAGCCCTGCACCGTAGTGGTTAACAACGGTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGan < 1:31872/251‑2 (MQ=255) | CAGCGGCGAAGTCCGATAGTGCGCACCAGACAAGAGCTGATAAACCTTTAACGGCGTTTCTGGATCGCTTTGCCATAACGTCTGTTCAAATGCGGAAATGACAATATTGCCTTGTGGTGTATGGGTGAAGTTTTCATCGTCAAAAACCAGTGCCTCGCTGACCATTTTTTCCAGCGGGCATCCCTGCGCCCAGCGGATCGGCTGTTGCAGTTCAAAACGGTGTAAATGCGGAAAGCGAGCGCAAAATTTCAGCAAAAAACCACGTCCGGTGCCTTCGTAGCCCTGCACCGTAGTGGTTAACAACGTTCGAGGAAAACGCGATACCAGTTGATGCAACAATGGCGCAGGTATGGCTGCGGCTTCATCGAC > NC_000913/2594711‑2595079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |