| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,171,411 | G→A | E310K (GAG→AAG) | qseC → | sensor histidine kinase QseC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,171,411 | 0 | G | A | 94.4% | 41.6 / ‑5.9 | 18 | E310K (GAG→AAG) | qseC | sensor histidine kinase QseC |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (12/5); total (12/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.43e-01 | |||||||||||
GAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGCTCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAGGACGTCGCGGAGATCCCGCTTGAAGATCTCCTGCAATCGTCGGTGATGGATATTTACCACACGGCGCAGCAGGCGAAAATTGACGTGCGACTGACACTCAATGCCCACAGCATCAAACGCACCGGGCAACCGCTATTGCTAAGTTTGTTGGTGCGAAATTTGCTGGATAACGCCGTGCGCTACAGTCCACAGGGCAGCGTGGTAGACGTCACGCTGAATGCT > NC_000913/3171192‑3171623 | ggaacacctcttACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGCTCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTTCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGTTTGATCAACGGCTCACGCTATCGCCGCTTGACTCACTGGATAACCTTCAGGACGTTGCGGAGATCCCGCTTGAAGATCTCCTGCAAtcgtc < 1:223698/241‑1 (MQ=255) aCTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAACTCTCTGACGATGATCCGCAGGCGCGGAAAAAACCACTGCTCCACTTACATTCCGGGCTCGATCGCGCTACTCGTCTGGATGTTCCACTGCTCCCGCTATCGCGGCTGGACTCACTGGATAACCTTCAGGACGTCGCGAAGCTCCCGCTTGAAGATCTCCTGCAATCGTCGGTGATGGATATTTACCACACGGCGCAGCAgg > 1:121847/1‑251 (MQ=255) tCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGCTCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAGGACGTCGCGAAGATCCCGCTTGAAGATCTCCTGCAATCGTCGGTGATGGATATTTACCACACGGCGCAGCAGGc < 1:205463/249‑1 (MQ=255) cGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGCTCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAGGACGTCGCGAAGATCCCGCTTGAAGATCTCCTGCAATCGTCGGTGATGGATATTTACCACACGGCGCAGCAGGCGAAAATTGAc > 1:86896/1‑251 (MQ=255) ncgcTGAAAGTGCAAACCGAAGTTGCGCAGCTCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGCTCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAGGACGTCGCGAAGATCCCGCTTGAAGATCTCCTGCAATCGTCGGTGATGGATATTTACCACACGGCGCAGCAGGCGAAAATTGACGTGCGACt > 1:28309/2‑251 (MQ=255) gcTGAAAGTGCAAACCGAAGTTGCGCAGCTCTCTGACGATGCTCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAGGACGTCGCGAAGATCCCGCTTGAAGATCTCCTGCAATCGTCGGTGATGGATATTTACCACACGGCGCAGCAGGCGAAAATTGACGTGCGACTg > 1:86349/1‑250 (MQ=255) cAAACCGAAGTTGCGCAGCTCTCTGACGATGCTCCGCAGGCACGGAAAAAAGCACTGCTCCAATTACATTCAGGGATCGATCGCGCTCCTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAGGACGTCGCGAAGATCCCGCTTGAAGATCTCCTGCCATCGTCGGTGATGGATATTTACCACACGgcgc > 1:102636/1‑214 (MQ=255) aaCCGCAGTTGCGCAGCTCTCTGACGATGATCCGCAGGCGCGGAAAAACGCACTGCTCCAATTACATTCCGGGATCGCTCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGTCTGGACTCACTGGATACCCTTCAGGACGTCGCGAAGATCCCGCTTGAAGATCTCCTGCAATCGTCGGTGATGGATATTTACCACACGGCGCAGCAGGCGAAACTTGACGTGCGACTGACACTCAATGccc > 1:137200/1‑251 (MQ=255) gcgcAGCTCTCTGACGCTGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCCGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGTCTGGACTCTCTGTATAACCCTCAGGACGTCGCGAATATTCCGCTTGAATCTCTCCTGCCATCGTCGGTTATGGATATTTACCACTCGCCGCCGCAGGCGAAAACTGATGTACGACTGACTCTCAATGCCCCCAGCATCa < 1:5255/250‑1 (MQ=255) agcAGCTCTCTGACGATGATCCGCAGGCGCGGAACAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAGGACGTCGCGAAGATCCCGCTTGAAGATCTCCTGCAATCGTCGGTGATGGATATTTACCACACGGCGCAGCAGGCGAAAATTGACGAGCGACTGACACTCAATGCCCACAGCATCaa > 1:71487/2‑250 (MQ=255) ncAGCTCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGTGGCTGGACTCACTGGATAACCTTCAGGACGTCGCGAAGATCCCGCTTGAAGATCTCCTGCAATCGTCGGTGATGGATATTTACCACACGGCGCAGCAGGCGAAAATTGACGTGCGACTGACACTCAATGCCCACAGCATCAAAc > 1:48237/2‑251 (MQ=255) gcgcGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCTCGCTACTCGTCTGGTTGATCAACTGCTCACGCTAGCGCGGCTGGACTCACTGGATAACCTTCAGGACGTCGCGAAGATCCCGCTTGAAGATCTCCTGCAATCTTCGGTGATGGAGATTTACCACACGGCTCAGCAGGCTAAAATTGTCGTGCGACTGACACTCAATGCCCACAGCATCAAACGCACCGGGCAACCGCTATTGCTAAg < 1:132884/251‑1 (MQ=255) atcgCGCTACTCGTCTGGTTGATAAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAGGACGCCGCGAAGATCCCGCTTGACGATCTACTGCAATCGTCGGTGATGGATATATACCACACGGCGCAGCAGGCGAAAATTGACGTGCGACTGACACTCAATGCCCACAGCATCAAACGCACCGGGCAACCGCTATTGCTAAGTTTGTTGGTGCGAAATTTGCTGGATAACGCCGTgcgc > 1:79244/1‑248 (MQ=255) cGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAGGACGTCGCGAAGATCCCGCTTGAAGATCTCCTGCAATCGTCGGTGATGGATATTTACCACACGGCGCAGCAGGCGAAAATTGACGTGCGACTGACACTCAATGCCCACAGCATCAAATGCACCGGGCAACCGCTATTGCTAAGTTTGTTGGTGCGAAATTTGCTGGATAACGCCGTGCGCTACAGTCCACAggn < 1:47305/251‑2 (MQ=255) ggTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAGGACGTCGCGAAGATCCCGCTTGAAGATCTCCTGCAATCGTCGGTGATGGATATTTACCACACGGCGCAGCAGGCGAAAATTNACGNNNNNCtnnnnnn > 2:159324/1‑144 (MQ=255) ggTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAGGACGTCGCGAAGATCCCGCTTGAAGATCTCCTGCAATCGTCGGTGATGGATATTTACCACACGGCGCAGCAGGCGAAAATTGACGTGCGACTGACACTCAATGCCCACAGCATCAAACGCACCGGGCAACCGCTATTGCTAAGTTTGTTGGTGCGAAAtttn < 1:159324/214‑2 (MQ=255) cACTGGATAACCTTCAGGACGTCGCGAAGATCCCGCTTGAAGATCTCCTGCAATCGTCGGCGCTGGATATTTACCCCAAGGCGAAGCAGGCGCAAATTGACGTGCGACTGACACTCAATGCCCACAGCATCACACGCACCGGGCAACCGCTATTGCTAAGTTTGTTGGTGCGAAATTTGCTGGATAACGCCGTGCGCTACAGTCCACAGGGCAGCGTGGTAGACGTCACGCTGAATGCt > 1:178910/1‑239 (MQ=255) ccTTCAGGACGTCGCGAAGATCCCGCTTGAAGATCTCCTGCAATCGTCGGTGATGGATATTTACCACACGGCGCAGCAGGc > 1:41149/1‑81 (MQ=255) | GAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGCTCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAGGACGTCGCGGAGATCCCGCTTGAAGATCTCCTGCAATCGTCGGTGATGGATATTTACCACACGGCGCAGCAGGCGAAAATTGACGTGCGACTGACACTCAATGCCCACAGCATCAAACGCACCGGGCAACCGCTATTGCTAAGTTTGTTGGTGCGAAATTTGCTGGATAACGCCGTGCGCTACAGTCCACAGGGCAGCGTGGTAGACGTCACGCTGAATGCT > NC_000913/3171192‑3171623 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |