| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,527,451 | G→A | S29S (AGC→AGT) | sgcE ← | putative epimerase SgcE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,527,451 | 0 | G | A | 91.7% | 20.5 / NA | 12 | S29S (AGC→AGT) | sgcE | putative epimerase SgcE |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (4/7); minor base C (1/0); total (5/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.73e-01 | |||||||||||
CGAAGGATAGTCCAGCGTTTCTGCATGAACGAAGATCCACGCGGGTCTGATTTCAGCCAGCGCGTTAAACCAGCGCTGTGGCCGGGCAAGCATGAAATGAAAGGACAAGGGATGAGGCGTCTGTCTGGCGACGGCCTGCACCGTTTTCATCCCAAACGTAATGTTGTTAATGAAGCTGCTGTCCTCAATATCCAGATGCAGGCTCCCAAAATCCAGATTGTCCAATGCCGTCAGCTCACGACCATAGTGCAGAGGATTTGCGCTGGCGAGAGAAGGGTGCAGGATCATAAGCGCCTCCGTTAACCTGATACCAGCGCAAACAGTGCATCGTCTGTGCTGGCATTTCCCACTGCCGTTAAGCGTTGTGGCGAATCAATAAACTGGC > NC_000913/4527250‑4527634 | cGAAGGATAGTCCAGCGTTTCTGCATGAACGAAGATCCACGCGGGTCTGATTTCAGCCAGCGCGTTAAACCAGCGCTGTGGCCGGGCAAGCATGAAATGAAAGGACAAGGGATGAGGCGTCTGTCTGGCGACGGCCTGCACCGTTTTCATCCCAAACGTAATGTTGTTAATGAAGCTGCTGTCCTCAATATCCAGATGCAGACTCCCAAAATCCAGATTGTCCAATGCCGTCAGc > 1:106197/1‑235 (MQ=255) agccagcGCTTTAAACCAGCGCTGTGGCCGGGCAAGCATGAAATGAAAGGACAAGGGATGAGGCGTCTGTCTGGCGACGGCCTGCACCGTTTTCATCCCAAACGTAATGTTGTTAATGAAGCTGCTGTCCTCAATATCCAGATGCAGACTCCCAAAATCCAGATTGTCCAATGCCGTCAGCTCACGACCATAGTGCAGAGGATTTGCGCTGGCGAGAGAAGGGTGCAGGATCATAAGCGCCTCCGTTAAcc < 1:15612/251‑1 (MQ=255) ngCCGGGCAAGCATGAAATGAAAGGACAAGGGATGAGGCGTCTGTCTGGCGACGGCCCGCACCGTTTTCATCCCAAACGTAATGTTGTTAATGCAGCTGCTGTCCTCCATATCCAGATGCAGACTCCCAAAATCCAGATTGTCCAATGCCGTCAGCTCACGACCATAGTGCAGCGGATTTGCGCTGGCGCGAGAAGGGTGCAGGATCATAAGCGCCTCCGTTAACCTGATACCAGAGCAAACAGTGCATCg > 1:30222/2‑251 (MQ=255) gCCGGGCAAGCATGAAATGAAAGGACAAGGGATGAGGCGTCTGTCTGGCGACGGCCTGCACCGTTTTCATCCCAAACGTAATGTTGTTAATGCAGATGCTGTCCTCAATATCCAGATGCAGCCCCCCACAATCCAGATTGTCCa > 1:147044/1‑144 (MQ=255) gATGAGGCGTCTGTCTGGCGACGGCCTGCACCGTTTTCATCCCAAACGTAATGTTGTTAATGAAGCTGCTGTCCTCAATATCCAGATGCAGACTCCCAAAATCCAGATTGTCCAATGCCGTCAGCTCACGACCATAGTGCAGAGGATTTGCGCTGGCGAGAGAAGGGTGCAGGATCATAAGCGCCTCCGTTAACCTTATACCAGCGCAAACAGTGCATCGTCTGTGCTGGCATTTCCCACTGCCGTTAAGc < 1:113652/251‑1 (MQ=255) ggCGACGGCCTGCACCGTTTTCATCCCAAACGTAATGTTGTTAATGAAGCTGCTGTCCTCAATATCCAGATGCAGACTCCCAAAATCCAGATTGTCCAATGCCGTCAGCTCACGACCATAGTGCAGAGGATTTGCGCTGGCGAGAGAAGGGTGCAGGATCATAAGCGCCTCCGTTAACCTGATACCAGCGCAAACAg > 1:101288/1‑197 (MQ=255) cGGCCTGCACCGTTTTCATCCCAAACGTAATGTTGTGAATGAAGCTGCTGTCCTCAATATCCAAATGCAGACTCCCAAAATCCAGATTGGCCAATTCCGTCAGCTCACGACCATAGTGCAGAGGATTTGCGCTGGCGAGAGAAGGGTGCAGGATCAt < 1:146553/157‑1 (MQ=255) ccTGCACCGTTTTCATCCCAAACGTAATGTTGTTAATGAAGCTGCTGTCCTCAATATCCAGATGCAGACTCCCAAAATCCAGATTGTCCAATGCCGTCAGCTCACGACCATAGTGCAGAGGATTTGCGCTGGCGAGAGAAGGGTGCAGGATCATAAGCGCCTCCGTTAACCTGATACCAGCGCAAACAGTGCATCGTCTGGGCTGGCATTTCCCACTGCCGTTAAGCGTTGTGGCGAAGCAATAAACTGGc < 1:89118/251‑1 (MQ=255) aTCCCAAACGTAATGTTGTGAATGAAGCTGCTGGCCTCAATATCCAGATGCAGACTCCCAAAATCCAGATTGTCCAATGCCGTCAGCTCACGACCATAGTGCAGAGGATTTg < 1:230337/112‑1 (MQ=255) nangangCTGCNGTCCNCAATATCCAGATGCANACTCCCAATATCCAGATTTNNCNATGCGNTCAGc < 2:106197/66‑1 (MQ=255) gCAGACTCCCAAAATCCAGATTGTCCAATGCCNTCAGCTCACNNCCNTAGTTNANNNGNNNTGNGCTGGCGAGAGAAGGGTGCNGGNNCATAAGNGCCTCCGTTAACCTGATACCAGCGCa < 2:61249/121‑1 (MQ=255) gCAGACTCCCAAAATCCAGATTGTCCAATGCCGTCAGCTCACGACCATAGTGCAGAGGATTTGCGCTGGCGAGAGAAGGGTGCAGGATCATAAGCGCCTCCGTTAACCTGATACCAGCGCa > 1:61249/1‑121 (MQ=255) | CGAAGGATAGTCCAGCGTTTCTGCATGAACGAAGATCCACGCGGGTCTGATTTCAGCCAGCGCGTTAAACCAGCGCTGTGGCCGGGCAAGCATGAAATGAAAGGACAAGGGATGAGGCGTCTGTCTGGCGACGGCCTGCACCGTTTTCATCCCAAACGTAATGTTGTTAATGAAGCTGCTGTCCTCAATATCCAGATGCAGGCTCCCAAAATCCAGATTGTCCAATGCCGTCAGCTCACGACCATAGTGCAGAGGATTTGCGCTGGCGAGAGAAGGGTGCAGGATCATAAGCGCCTCCGTTAACCTGATACCAGCGCAAACAGTGCATCGTCTGTGCTGGCATTTCCCACTGCCGTTAAGCGTTGTGGCGAATCAATAAACTGGC > NC_000913/4527250‑4527634 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |