| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,569,284 | C→T | Q15Q (CAG→CAA) | glgC ← | glucose‑1‑phosphate adenylyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,569,284 | 0 | C | T | 88.9% | 17.5 / ‑5.8 | 9 | Q15Q (CAG→CAA) | glgC | glucose‑1‑phosphate adenylyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (4/4); total (5/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAAGAATGACCAGCCGCGCTGAATGTGCTGCACCAGAGTGTGGGACTGGTACTGGGTGATCACGCCCATACGACGGATCCCGGAGTTGATGCAGTTAGACAGCGCAAAGTCGATAATGCGGAACTTACCGCCGAAGTGTACGGCCGGTTTTGCTCGCTTATTGGTTAAATCCTTCAGGCGGGTACCACGTCCTCCCGCCAGTATCAGGGCAACAGATTTCAATGGCAGCTGGCGCGCCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCCTTTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGCCAGACAGCCGTAATCACTGGGTTATCCTCTCCAGCGAATGGGGGAATGGCGTGCCACTCCCCAGCAGGTAAAACAATCTCTGTTACCTCAAGCGTGGCGTTAATTG > NC_000913/3569056‑3569491 | gaagaaTGACCAGCCGCGCTGAATGTGCTGCACCAGAGTGTGGGACTGGTACTGGGTGATCACGCCCATACGACGGATTCCGGAGTTGATGCAGTTAGACAGCGCAAAGTCGATAATGCGGAACTTACCGCCGAAGTGTACGGCCGGTTTTGCTCGCTTATTGGTTAAATCCTTCAGGCGGGTACCACGTCCTCCCGCCAGTATCAGGGCAACAGATTTCAATGGCAGTTGGCGCGCCAACATTAAGTGAt > 1:57894/1‑251 (MQ=255) cgcccccgctaatggggttgcgccAGAGTTGGGGACTGGTTCTGGTTCATCACGCCCATACGACGGATGCCGAATTTGATGCAGTTAGTCGGCGCAAAGTCGATAATGGGGACCTTACCGCCGATGTGTCCGGCCGGTTTTGCTCGCTAATTGTTTAAATCCGTCAGGGGGCTACCACGCCCTCCCGCCAGTATCAGGGCAACAGATTTCAATGGCAGTTGGCGCGCCAACATTAAGTGATCGTTCTtctc < 1:113442/229‑1 (MQ=255) gagTGTGGGACGGGTCCGGGGTGTTCACGCCAATACGAGGGTTCCGGGAGTTGTAGCAGTTAGACAGCGAAAAGCGGATAAGGCGGAACTTCCCGCCGAAGTGTACGTCCGGTTTGGCTCGCTTAGGGGGAAAACCCTTCAGGCGGGTACCACGTCCTCCCGCCAGTATCAGGGCAACAGATTTCAATGGCAGTTGGCGCGcc < 1:245686/203‑1 (MQ=255) aTCACGCCCATACGACGGATTCCGGAGTTGATGCAGTTAAACAGCGCAAAGTCGATAATGCGGAACTTACCGCCGCAGTGAAAGGCCGGATTTGATCGCTTATTGGTTACATCCTTCAGGCGGGTAACACGTCCTCCCGCCAGCATCAGGGCAACAGATTTTAATGGCAGCTGGCGCGCCAACCTTAAATGTTCGTTCTTCTCTAAACTAACCATGACTAACTCCtttt > 1:226037/1‑229 (MQ=255) ccGGAGTTGATGCAGTTAGACAGCGCAAAGTCGATAATGAGGAACTTACCGCCGAAGTGTCCGGCCGGATTTGCTCGCTTATTGGTTAAATCCTTCAGGCGGGTACCACGTCCTCCCGCCAGGATCAGGGCAACAGATTTCAATGGCAGTTGGCGCGCCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAAATCCTTTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGGCCCTGc > 1:180731/1‑251 (MQ=255) cGGAACTTACCGCCGAAGTGTACGGCCGGTTTTGCTCGCTTATTGGTTAAATCCTTCAGGCGGGTACCACGTCCTCCCGCCAGTATCCGGGCAACAGATTTCAATGGCAGTTGGCGGGCCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCCTTTTTTATCATCTCTGGAac > 1:162830/1‑185 (MQ=255) aatgtgtgcagCCGGTTTTGCTCGTTTATTGGTTAATCCCGGCAGTGGGGCCCCGCGTCGTCCCGCCAGTATCAGGGTAACAGATTTCAATGGCAGTTGGCGCGCCAACATTAAGTGATCGTTCTTCACTAAACTAACCATGACTAAGGCCTTATTGATCAGCTCTGGAACACACACAATCCGTGTGCAGGTGCCTGCCAGGCAGCCGTTATCACGGGGTTATCCTCTCCAGCGAATGGGGGAATGGCGTg < 1:223845/241‑1 (MQ=255) cACGTCCTCCCGCCAGTATCAGGGCAACAGATTTCAATGGCAGTTGGCGAGCCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCCTTTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGCCAGTCAGCCGTAATCACTGGGTTATCCTCTCCAGCGAATGGGGGAATGGCGTGCCACTCCCCAGCAGGTAAAACAATCTCTGTTACCTCAAGCGTGGCGTTAATTg > 1:243643/1‑251 (MQ=255) cgntATNANNGNNACANATTTCAATGGCAGTTGGCGCGNNAACATTAAGNGATCGTTCTTCTCTAAACTAACCATGACTAACTCCTTTTTTATCATCTCTGGANCACACACAANNCGNGTGCANGNNNCNNNCANACAGCCGTAATCACTGGGTNATNNTCTCCANCGAATGGGGGAATGGCGTGCCACTcc < 2:57894/189‑1 (MQ=255) | GAAGAATGACCAGCCGCGCTGAATGTGCTGCACCAGAGTGTGGGACTGGTACTGGGTGATCACGCCCATACGACGGATCCCGGAGTTGATGCAGTTAGACAGCGCAAAGTCGATAATGCGGAACTTACCGCCGAAGTGTACGGCCGGTTTTGCTCGCTTATTGGTTAAATCCTTCAGGCGGGTACCACGTCCTCCCGCCAGTATCAGGGCAACAGATTTCAATGGCAGCTGGCGCGCCAACATTAAGTGATCGTTCTTCTCTAAACTAACCATGACTAACTCCTTTTTTATCATCTCTGGAACACACACAATCCGTGTGCAGGTCCCTGCCAGACAGCCGTAATCACTGGGTTATCCTCTCCAGCGAATGGGGGAATGGCGTGCCACTCCCCAGCAGGTAAAACAATCTCTGTTACCTCAAGCGTGGCGTTAATTG > NC_000913/3569056‑3569491 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |