| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,473,265 | G→A | intergenic (‑56/+75) | yjgH ← / ← bdcA | RutC family protein YjgH/c‑di‑GMP‑binding biofilm dispersal mediator protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,473,265 | 0 | G | A | 90.9% | 22.6 / ‑5.9 | 12 | intergenic (‑56/+75) | yjgH/bdcA | RutC family protein YjgH/c‑di‑GMP‑binding biofilm dispersal mediator protein |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (6/4); total (6/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGCAAATTATCAAATGCCAGTCTGACTTGTTGCTGAAAATCGGGTTCTGGTGTTCCGTCCTCTCGACTTCCTACTTGCCCGGAAACAAACAGCAAATCGCCGGAACGAATAGCCGCAGAATAACGATGCTCAGCATATAGTGAATGTCGGCCAGCAGGGAAAACAGCGGTTCTTTCTACCATTTGGTTATCCTCAAGATTTACGACATGAACAGAAGATTTCTCTTTACCGGGAGCCGCTTTTAGCGGACGACGTGAGTAAACAAAACCCAGACATCATGGATAATGGCTGGGCTTAATTGAGCGTAGTCGGTTATGCGCCAAACGCGCCATCAATGGTATGCATCGCGCCGGTAACAAAACTGGCTTCTGGCCCTGCTAACCATGCGACCATACCAGCGACCTCTTCCGGTTGCCCATGTCTTTTGATAGCCATCAAACTATGCAACATATCGCGCATTGGCC > NC_000913/4473027‑4473491 | aTGCAAATTATCAAATGCCAGTCTGACTTGTTGCTGAAAATCGGGTTCTGGTGTTCCGTCCTCTCGACTTCCTACTTGCCCGGAAACAAACAGCAAATCGCCGGAACGAATAGCCGCAGAATAACGATGCTCAGCATATAGTGAATGTCGGCCAGCAGGGAAAACAGCGGTTCTTTCTACCATTTGGTTATCCACAAGATTTACGACATGAACAGAAGATTTCTCTTTACCGGGAGCCACTTTTAGCGgac < 1:234046/251‑1 (MQ=255) aaaTGCCAGTCTGACTTGTTGCTGAAAATCGGGTTCTGGTGTTCCGTCCTCTCGACTTCCTACTTGCCCGGAAACAAACAGCAAATCGCCGGAACGAATAGCCGCAGAATAACGATGCTCAGCATATAGTGAATGTCGGCCAGCAGGGAAAACAGCGGTTCTTTCTACCATTTGGTTATCCTCAAGATTTACGACATGAACAGAAGATTTCTCTTTACCGGGAGCCACTTTTAGCgn < 1:158380/237‑2 (MQ=255) ttCCGNNTTNNNGANNACCTACTTGCCCGGAAACAAACANCAAATCGCCGGGACGAATAGCAGCAGAATNANGNTGCCNNGAANATAGTGAATGNCGGCCCACAGGGAAAACAGCGGGTCTTTCTACCATTTGGTTATCCTCANGNTTTACGACCTGAGCAGAAGATTTCTCTTTACNGGGAGCCACTTTTAGCGGCCGAAGNGAGTnnaanannnnnnnnn > 2:183484/1‑210 (MQ=255) ntACTTGCCCGGAAACAAACAGCAAATCGCCGGAACGAATAGCCGCAGAATAACGATGCTCAGCATATAGTGAATGTCGGCCAGCCGGGAAAACAGCGGTTCTTTCTACCATTTGGTTATCCTCAAGATTTACGACATGAACAGAAGATTTCTCTTTACCGGGAGCCACTTTTAGCGGACGACGTGAGTAAACAAAACCCAGACATCATGGATAATGGCTGGGCTTAATTGAGCGTAGTCGGTTATGCGcc > 1:66614/2‑251 (MQ=255) acttacccgtcaacaaacaGCAAATCGCCGGAACGAATAGCCGCAGAATAACGATGCTCATCATATAGTGAATGTCGGCCAGCAGGGAAAACAGCGGTTCTTTCTATCATTTTGTTATCCTCAAGATTTACGACATGAACAGAAGATGTCTCTTTACCGGGAGCCGCTTTTAGCGCACCACGTCAGTAATCAAATCCTAAACCTCATGGATAATGGCTGGGCTTAATTGAGCGTAGTCGGTTATGCGcc < 1:183484/238‑1 (MQ=255) ccGGAAACAAACAGCAAATCGCCGGAACGAATAGCCGCAGAATAACGATGCTCAGCATATAGTGAATGTCGGCCAGCAGGGAAAACAGCGGTTCTTTCTACCATTTGGTTATCCTCAAGATTTACGACATGAACAGAAGATTTCTCTTTACCGTGAGCCTCTTTTAGCGGACGACGTGAGTAAACAAAACCCAGACATCATGGATAATGGCTGGGCTTAATTGAGCGTAGTCGGTTATGCGCCAAACgcgc < 1:147653/251‑1 (MQ=255) ccGGAAACAAACAGCAAATCGCCGGAACGAATAGCCGCAGAATAACGATGCTCAGCATATAGTGAATGTCGGCCAGCAGGGAAAACAGCGGTTCTTTCTACCATTTGGTTATCCTCAAGATTTACGACATGAACAGAAGATTTCTCTTTACCGGGAGCCACTTTTAGCGGACGACGTGAGTAAACAAAACCCAGACATCATGGATAATGGCTGGGCTTAATTGAGCGTAGTCGGTTATGCGCCAAACgcgc > 1:124455/1‑251 (MQ=255) cGGAAACAAACAGCAAATCGCCGGAACGAATAGCCGCAGAATAACGATGCTCAGCATATCGTGAATGTCGGCCAGCAGGGAAAACAGCGGTTCTTTCTACCATTTGGTTATCCTCAAGATTTACGACATGAACAGAAGATTTCTCTTTACCGGGAGCCACTTTTAGCGGACGACGTGAGTAAACAAAACCCAGACATCATGGATAATGGCTGGGCTTAATTGAGCGTAGTCGGTTATGCGCCAAACGCGcc > 1:163874/1‑251 (MQ=255) caGCAAATCGCCGGAACGAATAGCCGCAGAATAACGATGCTCAGCATATAGTGAATGTCGGCCAGCAGGGAAAACAGCGGTTCTTTCTACCATTTGGTTATCCTCAAGATTTACGCCATGAACAGAAGATTTCTCTTTACCGGGAGCCACTTTTAGCGGACGACGTGAGTAAACAAAACCCAGACATCATGGATAATGGCTGGGCTTAATTGAGCGTAGTCGGTTATGCGCCAAACgcgc > 1:173065/1‑240 (MQ=255) tCCTCNNGANNNACNNCATGAACAGAAGATTTCTCTTTANCGGGAGCCACTTTTAGCGGACGACGTGAGNANANAAAANNCAGNCATCATGGATNATGGCTGGGCTTAATTGAg > 2:189903/1‑114 (MQ=255) tCCTCAAGATTTACGACATGAACAGAAGATTTCTCTTTACCGGGAGCCACTTTTAGCGGACGACGTGAGTAAACAAAACCCAGACATCATGGATAATGGCTGGGCTTAATTGAg < 1:189903/114‑1 (MQ=255) gaagaTTTCTCTTTACCGGGAGCCACTTTTAGCGGACGACGTGAGTAAACAAAACCCAGACATCATGGATAATGGCTGGGCTTAATTGAGCGTAGTCGGTTATGCGCCAAACGCGCCATCAATGGTATGCATCGCGCCGGTAACAAAACTGGCTTCTGGCCCTGCTAACCATGCGACCATACCAGCGACCTCTTCCGGTTGCCCATGTCTTTTGATAGCCATCAAACTATGCAACATATCGCGCATTGGcc < 1:125775/251‑1 (MQ=255) | ATGCAAATTATCAAATGCCAGTCTGACTTGTTGCTGAAAATCGGGTTCTGGTGTTCCGTCCTCTCGACTTCCTACTTGCCCGGAAACAAACAGCAAATCGCCGGAACGAATAGCCGCAGAATAACGATGCTCAGCATATAGTGAATGTCGGCCAGCAGGGAAAACAGCGGTTCTTTCTACCATTTGGTTATCCTCAAGATTTACGACATGAACAGAAGATTTCTCTTTACCGGGAGCCGCTTTTAGCGGACGACGTGAGTAAACAAAACCCAGACATCATGGATAATGGCTGGGCTTAATTGAGCGTAGTCGGTTATGCGCCAAACGCGCCATCAATGGTATGCATCGCGCCGGTAACAAAACTGGCTTCTGGCCCTGCTAACCATGCGACCATACCAGCGACCTCTTCCGGTTGCCCATGTCTTTTGATAGCCATCAAACTATGCAACATATCGCGCATTGGCC > NC_000913/4473027‑4473491 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |