| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 119,204 | G→A | A158T (GCG→ACG) | ampD → | 1,6‑anhydro‑N‑acetylmuramoyl‑L‑alanine amidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 119,204 | 0 | G | A | 100.0% | 17.2 / NA | 8 | A158T (GCG→ACG) | ampD | 1,6‑anhydro‑N‑acetylmuramoyl‑L‑alanine amidase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (5/3); total (5/3) | |||||||||||
CCTTTCGATAAACGTGCATGGCATGCGGGAGTCTCTCAGTATCAGGGGCGCGAACGCTGCAATGATTTTTCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTACGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCC‑GGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCGGGCGCACGTTAGGCATGACCATTATTGCGATGGGCG > NC_000913/118997‑119437 | ccTTTCGATAAACGTGCATGGCATGCGGGAGTCTCTCAGTATCAGGGGCGCGAACGCTGCAATGATTTTTCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTACGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTACGCC‑GGATCGGAAAACCGATCCCGGTCCTGCATTTGATTggg < 1:136543/250‑1 (MQ=255) gATTTTTCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTGCGCCGGCCATCATTGCTTGCTAATCGGATATCACTAAAACAATGCAGGGCCACTGTGACATTAAGCC‑CGATGGGACAACCAATTCCGGTCCCGCATTTGGTTGTGCACGGTTTCGAGGGCCGGTCCGCAAGGAGACAACATGACGCTATTTATAACACTACTGGTGttt > 1:130913/1‑250 (MQ=255) aCCGATGCGCAGTATCAACAGCTTGCGGCGGTTACGCGGGAACTGATTGGTTGATCTCCGGATATCGCCAAAAAAAAGACGGGGCATTGTGGTTTTACGCCCGGA‑CGGAAAACCGCTCCCGGTCCCGCCTTTTCTTGGGGACGGGTTTGTGTGCCGGTCAGCAAGGAGACAACAAGACGCTATTTTCAACCTTACTGGTGGTAATTTTCGAGCGCCCGTTTTTGTTGGGCGGGCACTGGCCGCCTGatcct > 1:138974/1‑249 (MQ=255) gTTACGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTACGCC‑GGATCGGAAAACCGATccc > 1:219348/1‑90 (MQ=255) gattgCTATCCGGATATCGCTAAAAACAGTACGCGCCATTGTGATATTACGCC‑GGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGc < 1:227228/92‑1 (MQ=255) cATGACGGGCCATTGTGATATTACGCC‑GGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAACATTTTTCTCTCGGgcgcccg > 1:103428/1‑225 (MQ=255) cGGGCCATTGTGATATTACGCC‑GGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCGGGCGCACGTTAGGCATGACCATTATTGCGATGGGCg < 1:216133/251‑1 (MQ=255) ggCCATTGTGATATTACGCC‑GGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCCCGGTTTCGTGTGCTGGTAAGCAAGGAGACAACATGACGCTATTTACAAc > 1:161632/1‑109 (MQ=255) | CCTTTCGATAAACGTGCATGGCATGCGGGAGTCTCTCAGTATCAGGGGCGCGAACGCTGCAATGATTTTTCTATTGGGATTGAGCTTGAAGGCACCGATACGCTGGCGTATACCGATGCGCAGTATCAACAGCTTGCGGCGGTTACGCGGGCACTGATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCC‑GGATCGGAAAACCGATCCCGGTCCTGCATTTGATTGGGCACGGTTTCGTGTGCTGGTCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGTTTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAACATTTTTCTCTCGGGCGCACGTTAGGCATGACCATTATTGCGATGGGCG > NC_000913/118997‑119437 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |