| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 220,003 | C→T | intergenic (‑8/+110) | rcsF ← / ← metQ | sensor lipoprotein RcsF/L‑methionine/D‑methionine ABC transporter membrane anchored binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 220,003 | 0 | C | T | 81.8% | 16.4 / ‑2.1 | 11 | intergenic (‑8/+110) | rcsF/metQ | sensor lipoprotein RcsF/L‑methionine/D‑methionine ABC transporter membrane anchored binding protein |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (6/3); total (7/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01 | |||||||||||
CACCGAGATCGCGGAACGGTTTGCCGACTAATTCTTCTGCATTGGTATAAATTCGGACCGGCGTGGCGCGCGGCGCTTTCGGTTTTGCAGGCTCCGCTTTCGGCTGGGGTGCAGTGCTTTGAACGGGTTCGACAGGGGATCTGCTTAACATGGAACAGCCGCTTAGCATGAGTGCTACTAAACAGATCGGTAAAGCACGCATAGTA‑TTTCCTCAATGTATGATCAAAACGTCAATATTGAATCAGGAGCTTGTAAAAATGACAAGACGGGCAAGCGCCCGTCCTGAATGATATTACAAATTGTGGAAACAGCCTAAAAATTACCAGCCTTTAACAGCTCCGCCGTTAAACACTTTGTTTGCTGCTTCGTAAACTTCGTCAGACTGATAAGCCTGGACGAATTTCTTCACGTTCTCGGCGTCTTTG > NC_000913/219794‑220218 | cACCGAGATCGCTGAACGGTGTGCCGACTAATGCTTCTTCATTGGTATAAATTCGGACCGGCGTGGCGCGCGGCGCTTTCGGTTTTGCAGTCTCCGCTTTCGGCTGGGGTGCAGTACTTTGAACGGGTTCGACAGGGGATCTGCTTAACATGGAACAGCCGCTGAGCATGATTGCTACTAAACAGATCGGTAAAGCACTCATAGTA‑TTTTCCCAATGTATGATCAAAACGTCAATATTGAATCAGGAGCt < 1:98724/250‑1 (MQ=255) ccGACTAATTCTTCTGCATTGGTATAAATTCGGACCGGCGTGGCGCGCGGCGCTTTAGGTTTTGCAGGCTCCGCTTTCGGCTGGGGTGCAGTGCTTTGAACGGGTTCGACAGGGGATCTGCTTAACATGGAACAGCCGCTTAGCATGAGTGCTACTAAACAGATCGGTAAAGCACGCATAGGA‑TTTTCTCAATGTATGATCAAAACGTCAATATTGAATCAGGAGCTTGTAAAAATGACAAGACGGGCAAg < 1:114132/251‑1 (MQ=255) gCTTTCTGCTGGGGTGCAGTGCTTTGAACGGGTTCGACAGGGGATCTGCTTAACATGGAACAGCCGCTTAGCATGAGTGCTACTAAACAGATCGGTAAAGCACGCATAGTA‑TTTtctc < 1:82110/118‑1 (MQ=255) cTTAACATGGAACAGCCGCTTAGCATGAGTGCTACTAACCAGATCGGTAAAGCACGCATAGTA‑TTTTCTCAATGTATGATCAAAACGTCAATATTGACTCAGGAGCTTGTAAAAATGACAAGACGGGCAAGCGCCCGTCCTGAATGATATTACAAATTGTGGAAACAGCCTAAAAATTACCAGCCTTTAACAGCTCCGCCGTTAAACACTTTGTTTGCTGCTTCGTAAACTTCGTCAGACTGATAAGCCTg > 1:104009/1‑251 (MQ=255) gCCGCTTAGCATGAGTGCTACTAAACAGATCGGTAAAGCACGCATATTA‑TTTTCTCAATGTATGATCAAAACGTCAATATTGAATCAGGAGCTTGTAAAAATGACAAGACGGGCAAGCGCCCGACCTGAATGATATTACAAATTGTGGAAAAAGCCTAAAAATTACCAGCCTTTAACAGCTCCGCCGTTAAACACTTTGTTTGCTGCTTCGTAAAc < 1:11027/216‑1 (MQ=255) gCCGCTTAGCATGAGTGCTACTAAACAGATCGGTAAAGCACGCATAGTA‑TTTTCTCAATGTATGATCAAAACGTCAATATTGAATCAGNNGCTTGTnna > 2:11027/1‑99 (MQ=255) cccctttgctttaGTGCTACTAAACAGATCGGTAAAGCGCGCATGTTAGTTTCC‑AAAGTTATGATCAAAACGTCAATATTGAATCAGGATCTTTGAAAAAGTACAAGCCGGGCATGCCCCCGACCTGAATGGTATTTAAAATGTTGTAACCGGCCTAAAAATTACCAGCCTTTAACAGCTCCGCCGTCAAACACTTTGTTTGCTGCTTCGTAAACTTCGTCAGACTGATAAGCCTGGACGAATTTCTTCAc < 1:193566/239‑1 (MQ=255) gCATGAGTGCTACTAAACAGATCGGTAAAGCACGCATAGTA‑TTTTCTCAATGTATGATCAAAACGTCAATATTGAATCAGGAGCTTGTAAAAATGACAAGACGGGCAAGCGCCCGTCCTGAATGATATTACAAATTGTGGaaa > 1:8015/1‑143 (MQ=255) ntactaAACAGATCGGTAAAGCACGCATAGTA‑TTTTCTCAATGTATGATCAAAACGTCAATATTGAATCAGGAGCTTGTAAAAATGACAAGACGGGCAAGCGCCCGTCCTGAATGATATTACAAATTGTGGAAACAGCCTAAAAATTACCAGCCTTTAACAGCTCCGCCGTTAAACACTTTGTTTGCTGCTTCGTAAACTTCGTCAGACTGATAAGCCTGGACGAATTTCTTCACGTTCTCGGCGTCTTTg > 1:29861/2‑251 (MQ=255) ctactaAACAGATCGGTAAAGCACGCATAGTA‑TTTTCTCAATGTATGATCAAAACGTCAATATTGACTCAGGAGCTTGTCAAAATGACAAGACGGGc > 1:35197/1‑97 (MQ=255) aGCACGCACAGTA‑TTTTCTCAATGTATGATCAAAACGTCAATCTTGAATCAGGAGCTTGTAAAAATGACAAGACGGGCAAGCGCCCGGNNTGAATg > 2:17386/1‑96 (MQ=255) cACGCATAGTA‑TTTCCTCAATGTATGATCAAAACGTCAATATTGAATCAGGAGCTTGTAAAAATGACAAGACGGGCAAGCGCCCGTCCTGAATGATATTACAAATTGTGGAAACAGCCTAAAAATTACCAGCCNTTann > 2:157337/1‑137 (MQ=255) | CACCGAGATCGCGGAACGGTTTGCCGACTAATTCTTCTGCATTGGTATAAATTCGGACCGGCGTGGCGCGCGGCGCTTTCGGTTTTGCAGGCTCCGCTTTCGGCTGGGGTGCAGTGCTTTGAACGGGTTCGACAGGGGATCTGCTTAACATGGAACAGCCGCTTAGCATGAGTGCTACTAAACAGATCGGTAAAGCACGCATAGTA‑TTTCCTCAATGTATGATCAAAACGTCAATATTGAATCAGGAGCTTGTAAAAATGACAAGACGGGCAAGCGCCCGTCCTGAATGATATTACAAATTGTGGAAACAGCCTAAAAATTACCAGCCTTTAACAGCTCCGCCGTTAAACACTTTGTTTGCTGCTTCGTAAACTTCGTCAGACTGATAAGCCTGGACGAATTTCTTCACGTTCTCGGCGTCTTTG > NC_000913/219794‑220218 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |