| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 857,970 | C→T | A364A (GCG→GCA) | ybiU ← | DUF1479 domain‑containing protein YbiU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 857,970 | 0 | C | T | 87.5% | 15.1 / ‑5.9 | 8 | A364A (GCG→GCA) | ybiU | DUF1479 domain‑containing protein YbiU |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (1/6); minor base A (1/0); total (2/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.50e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAATCGATTTTCTTAATCCCACATCAATTCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCCTTTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGATGACGTCGCAGTGCCACCAGACGGAGTCTCCGGCTTCGAGTTTTGGAATGCTGGTTAACGCCTCAATCAACAGTGGATGCCATTGCTCTGATACCGGCAATACTCTTCCGGGCGCTACGCCGCACAGTTCATCCTCCGGCAC > NC_000913/857752‑858173 | gAATCGATTTTCTTAATCCCACATCAATTCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCCTTTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGGGCTGCAGGAATTTACAGCACGTTGCCCCAACCttn < 1:69601/251‑2 (MQ=255) tCTTAATCCCACATCAATTCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCCTTTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCTGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGAttttn < 1:153691/250‑2 (MQ=255) cccACATCAATTCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCCTTTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCTGCAGGAATGTACATCACGTTGCCCCAACCGTGTTGATTTTCAACgggg < 1:71495/250‑1 (MQ=255) aTGCGCCTTTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCTGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTGCAACGGGGGCAACGGAATGGATGACGTCGCAGTGCCACCAGACGGAGTCTCCGGCTTCGAGTTTTGGAATGCTGGTTAACGCCTCAATCAACAGTGGATGCCATTGCTCTGATACCGGCAATACTCTTCCGGGTGCTAcgccg < 1:220423/251‑1 (MQ=255) tttCCAGTGCGGCCTTCACCGTGTGCGCGTAGGCAAGATTGTTCTCGCACATCGGTGCTGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAGCGGGGGCAACGGAATGTATGACGTCGCAGTGCCACCAGACGGAGTCTCCGGCTTCGAGTGTTGGAATGCTGGTTAACGCCGCAATCAACAGTGGATGCCATTGCTCTGATACCGGCAATACTCTTCCGGGTGCTACGCCGCACAGTTc < 1:251070/250‑1 (MQ=255) gCCTTTACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCTGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGATGACGTCGCAGTGCCACCAGACGGAGTCTCCGGCTTCGAGTTTTGGAATGCTGGTTAACGCCTCAATCAACAGTGGATGCCATTGCTCTGATACCGGCAATACTCTTCCGGGTGCTACGCCGCACAGTTCATCCTCCGGcac > 1:63126/1‑251 (MQ=255) ctcGCNAATCGNTNNAGCAGGAATGTACATCACGNTGCCCCAACCTTGTTNATTTNCAACGNGGNcn > 2:96460/1‑66 (MQ=255) ctcGCACATCGGTGCTGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGATGACGTCGCAGTGCCACCAGACGGAGTCTCCGGCTTCGAGTTTTGGAATGCTGGTTAACGCCTCAATCAACAGTGGATGCCATTGCTCTGATACCGGCAATACTCTTCCGGGTGCTAcgc < 1:96460/197‑1 (MQ=255) | GAATCGATTTTCTTAATCCCACATCAATTCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCCTTTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGATGACGTCGCAGTGCCACCAGACGGAGTCTCCGGCTTCGAGTTTTGGAATGCTGGTTAACGCCTCAATCAACAGTGGATGCCATTGCTCTGATACCGGCAATACTCTTCCGGGCGCTACGCCGCACAGTTCATCCTCCGGCAC > NC_000913/857752‑858173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |