| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,914,209 | G→A | A203V (GCG→GTG) | prc ← | tail‑specific protease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,914,209 | 0 | G | A | 91.7% | 23.5 / ‑6.2 | 12 | A203V (GCG→GTG) | prc | tail‑specific protease |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (3/8); minor base T (0/1); total (3/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
GATAGCTTTACTCTTCGCTGCCGGACCACCTGCCACCATCGAATTGATAACGGTGTAGTCATCATCCATTTGCAGCACTGCGCCAATACCTTCCAGCGACAAACTCATTTCAGTGTTGAACTGTTCGGTATTACGCGGGGAAAGATAGTTGGTATGCGGGTCGATTTCACGCGCAAACGCCGTCATTGCCAGCGAGAAAACATCTTCGCTGTTGGTTTGCGCCAGACGACGAATGGCAAATTTGTAGCGGCGAGTCAGGGTTTCACGAATTTCTTTATCCGTTTTTCCTGTCAGCTTCAGGCTTAACTCGTCGAATTTGACTTTACTGTCCCACAGCGCGTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAACGC > NC_000913/1913989‑1914442 | gATAGCTTTACTCTTCGCTGCCGGACCACCTGCCACCATCGAATTGATAACGGTGTAGTCATCATCCATTTGCAGCACTGCGCCAATACCTTCCAGCGACAAACTCATTTCAGTGTTGAACTGTTCGGTATTACGCGGGGAAAGATAGTTGGTATGCGGGTCGATTTCACGCGCAAACGCCGTCATTGCCAGCGAGAAAACATCTTCGCTGTTGGTTTGCACCAGACGACGAATGGCAAATTTGTAgcggc < 1:46032/251‑1 (MQ=255) cGCTGCCGGACCACCTGCCACCATCGAATTGATAACGGTGTAGTCATCATCCATTTGCAGCACTGCGCCAATACCTTCCAGCGACAAACTCATTTCAGTGTTGAACTGTTCGGTATTACGCGGGGAAAGATAGTTGGTATGCGGGTCGATTTCACGCGCAAACGCCGTCATTGCCAGCGAGAAAACATCTGCGCTGTTGGTGTGCACCAGACGACGAATGGCAAATTTGTAGCGGCGAGTCAGGGTTTCAc < 1:208251/251‑1 (MQ=255) ccTGCCACCATCGAATTGATAACGGTGTAGTCATCATCCATTTGCAGCACTGCGCCAATACCTTCCAGCGACAAACTCATTTCAGTGTTGAACTGTTCGGTATTACGCGGGGAAAGATAGTTGGTATGCGGGTCGATTTCACGCGCAAACGCCGTCATTGCCAGCGAGAAAACATCTTCGCTGTTGGTTTGCTCCAGACGACGAATGGCAAATTTGTAGCGGCGAGTCAGGGTTTCACGAATTTCTTTATc < 1:235713/251‑1 (MQ=255) aTCGAATTGATAACGGTGTAGTCATCATCCATTTGCAGCACGGCGCCAATACCTACCAGCGACAAACTCATTTCAGTGTTGAACTGTTCGGTATTACGCGGGGAAAGATAGTTGGTATGCGGGTCGATTTCACGCGCAAACGCCGTCATTGCCAGCGAGAAAACATCTTCGCTGTTGGTTTGCACCAGACGACGAATGGCAAATTTGTAGCGGCGAGTCAGGGTTTCACGAATTTCTGTATCCGTTTTTcc < 1:59041/251‑1 (MQ=255) aaTTGATAACGGTGTAGTCATCATCCATTTGCAGCACTGCGCCAATACCTTCCAGCGACAAACTCATTTCAGTGTTGAACTGTTCGGTATTACGCGGGGAAAGATAGTTGGTATGCGGGTCGATTTCACGCGCAAACGCCGTCATTGCCAGCGAGAAAACATCTTCGCTGTTGGTTTGCACCAGACGACGAATGGCAAATTTGTAGCGGCGAGTCAGGGTTTCACGAATTTCTTTATCCGTTTTTCCTGTc < 1:89921/251‑1 (MQ=255) gtgtAGTCATCATCCATTTGCAGCACTGCGCCAATACCTTCCAGCGACAAACTCATTTCAGTGTTGAACTGTTCGGTATTACGCGGGGAAAGATAGTTGGTATGCGGGTCGATTTCACGCGCAAACGCCGTCATTGCCAGCGAGAAAACATCTTCGCTGTTTGTTTGCACCAGACGACGAATGGCAAATTTGTAGCGGCGAGTCAGGGTTTCACGAATTTCTTTATCCGTTTTTCCTGTCAGCTTCAGGCt < 1:79970/251‑1 (MQ=255) gTATGCGGGTCGATTTCACGCGCAAACGCCGTCATTGCCAGCGAGAAAACATCTTCGCTGTTGGTTTGCACCAGACGACGAATGGCAAATTTGTAGCGGCGAGTCAGGGTTTCACGAATTTCTTTATCCGTTTTTCCTGTCAGCTTCAGGCTTAACTCGTCGAATGTGACTTTACTGTc < 1:197493/179‑1 (MQ=255) gCGGGTCGATTTCACGCGCAAACGCCGTCATTGCCTGCGAGAAAACATCTTCGCTGTTGGTTTGCACCAGACGACGAATGGCAAATTTGTAGCTGCGAGTCAGTGTTTCACGAATTTCTTTATCCGTTTTGCCTGTCAGCTTCAGGCTTAACTCGTCGAATTTGACGGTACTGTCCCACAGCTCGTTCAACTCATCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGccn < 1:24131/251‑2 (MQ=255) ccGTCATTGCCAGCGAGAAAACATCTTCGCTGTTGGTTTGCACCAGACGAAGAATGGCAACTTTGTAGCGGCGCGTCAGGGATTCACGAATTTCTTTATCCGTTTTTCCTGTCAGCTTCAGGCTTAACTCGTCGAATTTGACTTTCCTGTCCCACAGCGCGTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCCAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGt > 1:234088/1‑251 (MQ=255) aGCGAGAAAACATCTTCGCTGTTGGTTTGCACCAGACGACGAATGGCAAATTTGTAGCGGCGAGTCAGGGTTTCACGAATTTCTTTATCCGTTTTTCCTGTCAGCTTCAGGCTTAACTCGTCGAATTTGACTTTACTGTCCCACAGCGCGTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCAGCGGCTTTTCCAGTAcc < 1:56975/243‑1 (MQ=255) aGCGAGAAAACATCTTCGCTGTTGGTNTGCACCNNACNACGAATGGCAAATTTGTAGNGGNNNGNNNGNGCTTCNCGNNTTTTTTTATNCGTTTTTCCTGTCAGCTTCAGGCTTAACTCGTCGAATTTGACTTTACTGTCACNCAGCGCGTTNNACTCAGCCTCGTTTTTCGGCCNGGGNNCNNTNCTGNggn > 2:56975/1‑192 (MQ=255) cTGTTGGTTTGCACCAGACGACGAATGGCAACTTTGTAGCGGCGAGTCAGGGTTTCCCGAATTTCTTTATCAGTTTTTCCTGTCCGCTTCAGGCTTAACTCCTAGCACTTGCATTTACTGTCCCACAGCGCGTTCAACTCAGCCTCGTTTTTCGGCCAGGGAGCTTTGCTGCGGTCAAGGTTATAAGTGCCGTTGCCGATGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAACGc > 1:164055/1‑246 (MQ=255) | GATAGCTTTACTCTTCGCTGCCGGACCACCTGCCACCATCGAATTGATAACGGTGTAGTCATCATCCATTTGCAGCACTGCGCCAATACCTTCCAGCGACAAACTCATTTCAGTGTTGAACTGTTCGGTATTACGCGGGGAAAGATAGTTGGTATGCGGGTCGATTTCACGCGCAAACGCCGTCATTGCCAGCGAGAAAACATCTTCGCTGTTGGTTTGCGCCAGACGACGAATGGCAAATTTGTAGCGGCGAGTCAGGGTTTCACGAATTTCTTTATCCGTTTTTCCTGTCAGCTTCAGGCTTAACTCGTCGAATTTGACTTTACTGTCCCACAGCGCGTTCAACTCAGCCTCGTTTTTCGGCCAGGGCGCTTTGCTGCGGTCAAGGTTATAAGTGTCGTTGCCGGTGAAATCCATCGGCTTTTCCAGTACCGACAAAGCGTACTGGTAACGC > NC_000913/1913989‑1914442 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |