| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,519,285 | C→T | intergenic (‑221/+180) | aroK ← / ← hofQ | shikimate kinase 1/DNA utilization protein HofQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,519,285 | 0 | C | T | 100.0% | 24.7 / NA | 10 | intergenic (‑221/+180) | aroK/hofQ | shikimate kinase 1/DNA utilization protein HofQ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (6/4); total (6/4) | |||||||||||
CATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTCCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGTAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTGCGCGCGTCAAATAGATGAAACACGTTCAGCGTAAAAACATTACCGCTTTTACGGCTGTTTACTCACTGGAAACCAGTCGTGGCGTGATAAACACCACTAACTCGCGTCGTTCAT > NC_000913/3519145‑3519520 | cATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTCCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACTGGGTAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATg > 1:163775/1‑251 (MQ=255) ganTCAGACTGAAAATTATCCCAATACTCCAGCGGGTTTGGCAACTGAATAAATCANCCATCCCTCNNCANATCTGNTNNNTNNNAGNGCGCTGCCGTGCTACCACCNCTNNGGCGATNAATCACTTGGTAAGATTAGCGTaaaa < 2:61941/145‑1 (MQ=255) gagTCAGACTGAAAATTATCTCAATACTCCAGCGGGTTTGGCAACTGACTAAATCACCCATCCCTCTGCCTATCTGGTCGCTGCCAGCGCGCTGACTTGCTACCACCGCTCTGGCGATAAATCACTGGGTAAGATTAGCGTaaaa > 1:61941/1‑145 (MQ=255) ggCAACTGAATAAATCACCCATCCCTCTGCCTATCTGGTCGCTTCAAGCGCGCTGCCTTGCTACCACCGCTCTGCCCATAAATCACTGGGTAAGATTAGCGTAAACAAGACAGCAAAATGCCGCCTGACTGATAAATCATCATCATGGAACGCAGGCATCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTGCGCGCGTCAAATAGATGAAACACGTTCAGCGTAAAAACATTAc > 1:131979/1‑251 (MQ=255) cACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTTCTACCACCGCTCTGGCGAAAAAGCACTAGGTAAGAGTGACGTAAAAAAGACAGCAAAATGCCGCCTGAATTATAAATCATCATCATgg < 1:162593/133‑1 (MQ=255) gCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACTGGGTAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCg > 1:112920/1‑143 (MQ=255) gCCTTGCTACCACCGCTCTGGCGATAAATCACTGGG‑AAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGATCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTGTGCGCGTCAAATAGATGAAACACGTTCAGCGTAAAAACATTACCGCTGTTACGGCTGTTTACTCACTGGAAACCAGTCGTGGCGTg < 1:45173/239‑1 (MQ=255) caccGCTCTGGCGATAAATCACTGGGTAAGATTAGCGTAAAAAAGACAGCAAAATGGCGCCTGAATGATAAATCATCATCATTGAACGCAGGCAGCGAAGAGCACCAACTGTCAAATCGGTACTCCTTGTATGCTAAATACCTGCGCGCGTCAAATATATGAAACTCGTTCAGCGTAAGAACATTACCGCGTTTACGGCTGTTTACTCACTGGAAAcc < 1:135101/218‑1 (MQ=255) ctGGCGATACATCACTGGGTCAGATTAGCGTAAAAAAGACAGCAAAATGCCGACTGAATGATAAATCATCATCATGGAACGTAGGCAGCGAAGAGCACCACCTCTTAAATCGGTACTCCTTGTATGCTAAATACCTGCGCGCGTCAAATAGATGAAACACGCTCAGCGTAAAAACATTACCGCTTTTAAGGCTGTTTACTCACTGGAAACAAGTCGTGGCGTGATAAACACCACTAACTCGCGTCGTTCAt > 1:61310/1‑251 (MQ=255) cGATAAATCACTGGGTAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGAAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTGCGCACGTCAAATAGATGAAACACGTTCAGCGTAAAAACAtt > 1:106019/1‑174 (MQ=255) | CATAAGATATTGCGAGAGTCAGACTGAAAATTATCTCAATACTCCAGCGGGTTTGGCAACTGAATAAATCACCCATCCCTCTGCATATCTGGTCGCTGCAAGCGCGCTGCCTTGCTACCACCGCTCTGGCGATAAATCACCGGGTAAGATTAGCGTAAAAAAGACAGCAAAATGCCGCCTGAATGATAAATCATCATCATGGAACGCAGGCAGCGAAGAGCACCAACTCTCAAATCGGTACTCCTTGTATGCTAAATACCTGCGCGCGTCAAATAGATGAAACACGTTCAGCGTAAAAACATTACCGCTTTTACGGCTGTTTACTCACTGGAAACCAGTCGTGGCGTGATAAACACCACTAACTCGCGTCGTTCAT > NC_000913/3519145‑3519520 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |