| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 830,226 | C→T | V140M (GTG→ATG) | cecR ← | DNA‑binding transcriptional dual regulator CecR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 830,226 | 0 | C | T | 90.9% | 22.1 / ‑6.3 | 12 | V140M (GTG→ATG) | cecR | DNA‑binding transcriptional dual regulator CecR |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (4/6); total (5/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CAAAATCAGGTCGATATGACAGGTCACCGTCTGGTTGATCAGTTCGGTCTTTTCTTCATCGAACGCGGTCCAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGGTGTCATCCTGGGTGAGCAGCTTAATCATGTTCCTGCAGGCGCGAAGGATCAGTTCACGGATGGCAGCCCGATCAGGCTGTGGTTGCGCGAACAAGCGTTCGGCTTCCTCGGCATGCGGACGGAACTGCTCGCCAATAAAATCG > NC_000913/829999‑830443 | cAAAATCAGGGCGATATGACAGGTCACCGTCTGGTTGATCAGTTCGGTCTGTTCTTCATCGACCGCGGTCCAGCCGGTACGTAAAGGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGAGTCATTGGCGTCGCAGCAGGTCCAGGCGGCAATCAGGCGTGTCAGGAGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGAGGTAgg > 1:230904/1‑251 (MQ=255) gACAGGTCACCGTCTGGTTGATCAGTTCGGTCTTTTCTTCATCGAACGCGGTCCAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCAGCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAgc < 1:37889/251‑1 (MQ=255) aGGTCGCCGTCGGGTTGGTCAGTTCGGTCTTTTCTTCATCGAACGCGGTCCAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGGATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGGTTCTGTGTAGCTGACTAATCATCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAgctgc < 1:134382/251‑1 (MQ=255) ttttCTTCATCGAACGCGGTCCAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGAGCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCATCTGtccg < 1:111231/186‑4 (MQ=255) gTCCANNCGNNNCGNNACAGAATTGTTTCTTTGCCAAGANGGAACGCCAGACTCTCACCAATCAACGCANGNGNATGANNGATNATGCGGGTGTNATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTAGCTNTNCAGCGGACTAATCATCTGTTCGTGCACCAGGNGGTAGGCTGCCGTGGGAGAGAGCTNCTCANnggntnnnnnnn > 2:190170/1‑211 (MQ=255) gTCCAGCCGGTTCGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCATCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACg < 1:190170/234‑1 (MQ=255) gCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCATCTGTTCGTGCACCAGGTGGTAGGc > 1:6745/1‑153 (MQ=255) cGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCATCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGGTGTCATCCTGGGTGAGCAGCTTAATCATGTTCCTGCAGGCGCGAAGGAt > 1:141980/1‑240 (MQ=255) gNNGGTGTCNNTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCATCTGTTCGTGCACCAGGTGGTAGGc < 2:6745/99‑1 (MQ=255) gCTGTGTAGCGGACTAATCATCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGgan < 1:153203/56‑2 (MQ=255) gCTGTGTAGCGGACTAATCATCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGgag > 2:153203/1‑56 (MQ=255) ggACTAATCATCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGTAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGGTGTCATCCTGGGTGAGCAGCTTAATCATGTTCCTGCAGGCTCGAAGGATCAGTTCACGTATGGCAGCCCGATCAGGCTGTGGTTGCGCGAACAAGCGTTCGGCTTCCTCGGCATGCGGACGGAACTGCTCGCCAATAAAATCg < 1:176737/228‑1 (MQ=255) | CAAAATCAGGTCGATATGACAGGTCACCGTCTGGTTGATCAGTTCGGTCTTTTCTTCATCGAACGCGGTCCAGCCGGTACGTAACAGAATTGTTTCTTTGCCAAGACGGAACGCCAGAATCTCACCAATCAACGCATGGGTATGAAGGATCATGCGGGTGTCATTGGCGTCGCAGCCGGTCCAGGCGGCAATCAGGCGTGTCAGGTGGCTGTGTAGCGGACTAATCACCTGTTCGTGCACCAGGTGGTAGGCTGCCGTGGGAGAGAGCTGCTCACGGGAGATAAACTTGCTGAGGTTGACGGTGTCATCCTGGGTGAGCAGCTTAATCATGTTCCTGCAGGCGCGAAGGATCAGTTCACGGATGGCAGCCCGATCAGGCTGTGGTTGCGCGAACAAGCGTTCGGCTTCCTCGGCATGCGGACGGAACTGCTCGCCAATAAAATCG > NC_000913/829999‑830443 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |