| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 203,227 | A→G | Y223C (TAT→TGT) | lpxA → | acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 203,227 | 0 | A | G | 88.9% | 16.1 / ‑3.9 | 9 | Y223C (TAT→TGT) | lpxA | acyl‑[acyl‑carrier‑protein]‑‑UDP‑N‑ acetylglucosamine O‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (7/1); total (7/2) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.79e-01 | |||||||||||
CGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTCCCTCCTTATGTCATTGCGCAGGGTAACCACGCAACGCCGTTCGGTGTCAATATCGAAGGGCTGAAGCGCCGCGGATTCAGCCGTGAGGCGATTACCGCTATCCGCAATGCGTATAAGCTGATTTATCGTAGCGGTAAAACGCTCGATGAAGTGAAACCGGAAATTGCTGAACTGGCGGAAACATATCCGGAAGTGAAAGCCTTTACCGATTTCTTTGCACGCTCAACGCGCGGTCTGATTCGTTAATGACTGAACAGCGTCCATTAACGATTGCCCTGGTCGCCGGAGAAACCTCCGGC > NC_000913/203009‑203401 | cgcgATCATCGGCGGAATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCCGCTGCTCCGGTGTGGCGCAGGACGTCCCTCCTTATGTCATTGCGCAGGGTAACCACGCAACGCCGTTCGGTGTCAATATCGAAGGGCTGAAGCGCCGCGGATTCAGCCGTGAGGCGATTACCGCTATCCGCAATGCGTATAAGCTGATTTATCGTAGCGGTAAAACGCTCGATGAAGTGAAAc < 1:11678/251‑1 (MQ=255) gtcggcATGACCGCAGTCCATCAGTTCTGCAGCATTAGTGAGCACGTGAAGGCTGGAGGCTGTTTCGGCGCGGCGCAGGACGTCCCACTTTCTGACCTTGAGCAAGGTCACCACGCAACGCCGTTCGGTGTCAATTTCGAAGGGCTGAAGAGCCGCGGATTCCGCCGTGAGGCGATTACCGCTATCCGCAATGCGTATAAGCTGATTTGTCGTAGCGGTAAAACGCTCGATGAAGTGACACAGGAAATTGc > 1:238868/3‑251 (MQ=255) cctTATGTCATTGCGCAGGGTAACCACGCAACGCCGTTCGGTGTCAATATCGAAGGGCTGAAGCGCCGCGGATTCAGCCGTGAGGCGATTACCGCTATCCGCAATGCGTATAAGCTGATTTGTCGTAGCGGTAAAACGCTCGATGAAGCGAAACCGGAAATTGCTGAACTGGCGGAAACATATCCGGAAGTGAAAGCCTTTACCGATTTCTTTGCACGCTCAACGCGCGGTCTGATTCGTTAATGACTGa > 1:247626/1‑250 (MQ=255) gtCAATATCGAAGGGCTGAAGCGCCGCGGATTCAGCCGTGCGGCGATTACCGCTATCCGCAATGCGTATAAGCTGATTTGTCGTAGCGGTAAAACGCTCGATGAAGTGAAACCGGAAATTGCTGCACTGGCGGAAACATATCCGGAAGTGAAAGCCTTTACCGATTTCTTTGCACGCTCAACGCGCAGTCTGATTCGTTAATGACTGAACAGCGTCCATTAACGATTACCCTGGTCGcc > 1:55673/1‑239 (MQ=255) aGCCGTGAGGCGATTACCGCTATCCGCCATGCGTATCAGCTGATTTGTCGTTGCGGTCAAACGCTCGATGAAGTGAAACCGGAAATTGCTGAACTGGCGGAAACATATCCGGAAGTGAAAGCCTTTACCGATTTCTTTGCACGCTCAACTCGCGGTCTGATTCGTTAATGACTGAACAGCGTCCa > 1:225281/1‑185 (MQ=255) gCGATTACCGCTATCCGCAATGCGTATAAGCTGATTTGTCGTAGCGGTAAAACGCTCGATGAAGTGAAACCGGAAATTGCTGAACTGGAGGAAACATATCCGGAAGTGAAAGCCTTTACCGATTTCTTTGCACGCTCAACGCGCGGTCTGATTCGTTAATGACTGAACAGCGTCCATTAACGATTGCCCTGGTCGCCGGAGAAACCTCCGGc > 1:248915/1‑212 (MQ=255) tANCGCNANNCNNAATNCGTATAAGCTGATTTGTCGTANNGGTAAAACGNTCGATGAAGTGAAACCGGAAATTGCTGAACTGGCGGAAACATACCCGGAAGTGNAAGCCTTTANNGANTCCTTNGNNNGNNNAANGCGCAGTCTGCTTCGTTAANGANNGAACAGNGTCCATTAACGATTGCCCTGGTCGcc < 2:55673/192‑1 (MQ=255) gCAATGCGTATAAGCTGATTTGTCGTAGCGGTAAAACGCTAGATGAAGTGAAACCGGAAATTGCTGAACTGGAGGAGACATATACGGAAGTGAAAGCCTTTACCGATTTc > 1:210979/1‑110 (MQ=255) ngTATAAGCTGATTTGTCGTAGCGGTAAAACGCTCGATGAAGTGAAACCGGACATTGCTGAACTGGCGGAAACATATCCGGAAGTGAAAGCCTTTAACGATTTCTTTGCACGCTCAACGCGCGGTCTGATTCGTTAATGACTGAACAGCGTCCATTAACGATTGCCCTGGTCGc > 1:30446/2‑174 (MQ=255) | CGCGATCATCGGCGGCATGACCGCAGTCCATCAGTTCTGCATCATTGGTGCGCACGTGATGGTTGGCGGCTGCTCCGGTGTGGCGCAGGACGTCCCTCCTTATGTCATTGCGCAGGGTAACCACGCAACGCCGTTCGGTGTCAATATCGAAGGGCTGAAGCGCCGCGGATTCAGCCGTGAGGCGATTACCGCTATCCGCAATGCGTATAAGCTGATTTATCGTAGCGGTAAAACGCTCGATGAAGTGAAACCGGAAATTGCTGAACTGGCGGAAACATATCCGGAAGTGAAAGCCTTTACCGATTTCTTTGCACGCTCAACGCGCGGTCTGATTCGTTAATGACTGAACAGCGTCCATTAACGATTGCCCTGGTCGCCGGAGAAACCTCCGGC > NC_000913/203009‑203401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |