New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1651548	NA (NA)	12 (1.180)	9/298	0.1	92.3%	noncoding (706/706 nt)	IS2	repeat region
	?	NC_000913	= 1792776	1 (0.100)					intergenic (‑45/+33)	nlpC/btuD	NlpC/P60 family lipoprotein NlpC/vitamin B12 ABC transporter ATP binding subunit

AGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGC  >  NC_000913/1651327‑1651789                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                  aGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTAc                                                                                                                                                                                                                      <  1:202012/251‑1 (MQ=255)              gTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAAAGGCAGCCAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGTATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACACAATAAAAACTg                                                                                                                                                                                                         >  1:46588/1‑251 (MQ=255)                                                         cAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGGTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAAGATAGGGGCAAATCCACAGGTGAACTACGCCCCTCTTTTTGTTACGCAATAAAAACTGGTGTTGTCGATTATGCAAAACAGTTTCCCTCCTCACGCAAtat                                                                                                                                                              <  1:229440/251‑3 (MQ=18)                                                                                   cTTGCAGAGGCGTTCGAGCATTATAACGAATGGAATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGCATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAGTAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGGGGcatgaca                                                                                                                                      >  1:37791/1‑243 (MQ=255)                                                                                                         ataACGAATGGCATCCGCATAGAGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTgn                                                                                                               <  1:156209/250‑2 (MQ=255)                                                                                                                    cATCCGCAGAGGGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCGTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACTCTCCTCTGTTTGTTACGCAAGAAAAACTGGTGTTGTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTTGAAAAATTTGGTGAGTCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAATTTc                                                                                                   <  1:44444/251‑1 (MQ=37)                                                                                                                                     gggTTATCGTTTGCCAGGGTAATAGCTGCGGCGGCGGGCTTTTAAGGGGTTAAGTGATATCAGATGTGTGGGAATATAGGGGCAGATCGACAGGTGAACTGGGGTCCTTGGTTTGGTACTCAATGAAAACCGGTGTTTCCGGCGATGCAAAACAGGTTCTCACCGCAGGCAACGTGTAATAATGTTGTGAGAGTCGAGAATATTTAACTATAGAAGAACTGTCTGAAAAATTTCTGGCACTGAAAGAAAc                                                                                   <  1:233684/250‑1 (MQ=255)                                                                                                                                                               ttcGGCAGCGGGCTTGTAATGGGTTAAGTGATAAACGATGTCTGGAAATATAGGGGCCAACCCACGGGCGAACTACGCTCCTCTGTATGTTACGTAATTAAAACTGGTGTTTTGGACTCTGCCAAACAGTTTCCCTCCTCACGCAGTCTGGAAAAATTTGGGGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAAGTTATGGCACTGAAGGAAACTGAAGtggagaacgggagagcacaca                                                         >  1:228435/3‑230 (MQ=255)                                                                                                                                                                                        aaGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCGCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAATTTCTGGc                                                                                               <  1:40450/187‑1 (MQ=255)                                                                                                                                                                                                                     gtcAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTCCGCACTAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCCATCTGGCAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGc  >  1:234102/3‑251 (MQ=255)                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                  AGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATACCGTGCCGTCATCAAAAATATCCTGAGCATAATCGGTGAAAAAAATCTTGC  >  NC_000913/1651327‑1651789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.