| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,850,605 | C→T | T590I (ACC→ATC) | sppA → | protease IV, a signal peptide peptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,850,605 | 0 | C | T | 100.0% | 39.2 / NA | 15 | T590I (ACC→ATC) | sppA | protease IV, a signal peptide peptidase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (7/8); total (7/8) | |||||||||||
GGGCCACGTCTGGACCGGTCAGGATGCAAAAGCTAACGGGCTGGTCGATAGTCTCGGGGATTTCGATGATGCGGTCGCCAAAGCAGCAGAGCTGGCAAAAGTGAAACAGTGGCATCTGGAATATTACGTTGATGAACCGACCTTCTTCGACAAAGTGATGGACAACATGTCTGGTTCTGTCCGGGCAATGTTGCCAGATGCGTTCCAGGCCATGTTACCTGCACCGCTGGCCTCGGTAGCCTCTACCGTTAAAAGTGAAAGTGACAAGCTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGCTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCG > NC_000913/1850360‑1850839 | gggCCACGTCTGGACGGGTCAGGATGCAAAAGCTAACGGGCTGGTCGATAGTCGCGGGGATTTCGATGATGCGGTCGCCAAAGCAGCAGAGCTGGCAAAAGTGAAACAGTGGCATCTGGAATATTACGTGGATGAACCGACCTTCGTCGACAAAGTGATGGTCAACATGTCTGGTGCTGTCCGGGCAATATTTCCAGATTGGTTCCAGGCCATTTTACCTGCACCGCTGGCCTCGGTAGCCTCTATCGTTa < 1:222015/251‑1 (MQ=255) cGATAGTCTCGGGGATTTCGATGATGCGGTCGCCAAAGCAACAGAGCTGGCACAAGTGAAACAGTCGCATCTGGAATATTAAGTTGATGAACCCACCTTCTTCGACCAAGTGATGGAAAACCTGTCTGGTTCTGTCCGGGCAATGATGCCAGATGCGTTCAAGGCCATGTTACCTGCACCGCTGGCCTCGGTAGCCTCTATCGTTAAAAGTGAAAGAGACAAGCTGGCCGCGTTTAATGACCCACAAAAcc > 1:113120/1‑251 (MQ=255) ggAATATTACGTTGATGAACCGACCTTCTTCGACAAAGTGATGGACAACATGTCTGGTTCTGTCCGGGCAATGTTGCCAGATGCGTTCCAGGCCATGTTACCTGCACCGCTGGCCTCGGTAGCCTCTATCGTTAAAAGTGAAAGTGACAAGCTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGa > 1:138265/1‑197 (MQ=255) cGACCTTCTTCGACAAAGTGATGGACAACATGTCTGGTTCTGTCCGGGCAATGTTGCCAGATGCGTTCCAGGCCATGTTACCTGCACCGCTGGCCTCGGTAGCCTCTATCGTTAAAAGTGAAAGTGACAAGCTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTcgacg < 1:91843/251‑1 (MQ=255) ccTTCTTCGACAAAGTGATGGACAACATGTCTGGTTCTGTCCGGGCAATGTTGCCAGATGCGTTCCAGGCCATGTTACCTGCACCGCTGGCCTCGGTAGCCTCTATCGTTAAAAGTGAAAGTGACAAGCTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGAtcgtcg > 1:107335/1‑224 (MQ=255) naTGGACAACATGTCTGGTTCTGTCCGGGCAATGTTGCCAGATGCGTTCCAGGCCATGTTACCTGCACCGCTGGCCTCGGTAGCCTCTATCGTTAAAAGTGAAAGTGACAAGCTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCt > 1:69536/2‑182 (MQ=255) ggACAACATGTCTGGTTCTGTCCGGGCAATGTTGCCAGAAGCGTTCCAGGCCATGTTACCTGCACCGCTGGCCTCGGTAGCCTCTATCGTTAAAAGTGAAAGTGACAAGCTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCGGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGc < 1:172051/251‑1 (MQ=255) aTGTCTGGTTCTGTCCGGGCAATGTTGCCAGATGCGTTCCAGGCCATGTTACCTGCACCGCTGGCCTCGGTAGCCTCTATCGTTAaaanngaaaggnnc > 2:4935/1‑95 (MQ=255) aTGTCTGGTTCTGTCCGGGCAATGTTGCCAGATGCGTTCCAGGCCATGTTACCTGCACCGCTGGCCTCGGTAGCCTCTATCGTTAAAAGTGAAAGTGACAAGCTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTgcg < 1:4935/154‑1 (MQ=255) gTTCTGTCCGGGCAATGTTGCCAGATGCGTTCCAGGCCATGTTACCTGCACCGCTGGCCTCGGTAGCCTCTATCGTTAAAAGTGAAAGTGACAAGCTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTgg < 1:19571/177‑1 (MQ=255) cGTTCCAGGCCATGTTACCTGCACCGCTGGCCTCGGTAGCCTCTATCGTTAAAAGTGAAAGTGACAAGCTGTCCGCGTTTAATGACCCACAAAACCGTTAGTCGTTTGGCCTGACCTGCGCCAACATGCGTTAAGTCGTGTACTGAGTTGCCGCCAGAGCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTcc < 1:251676/221‑1 (MQ=255) cGTTCCAGGCCATGTTACCTGCACCGCTGGCCTCGGTAGCCTCTATCGTTAAAAGTGAAAGTGACAAGCTGGCCGCGTTTAATGa > 1:10133/1‑85 (MQ=255) cGTTCCAGGCCATGTTACCTGCACCGCTGGCCTCGGTAGCCTCTATCGTTAAAAGTGAAAGTGACAAGCTGGCCGCGTTTAATGa < 2:10133/85‑1 (MQ=255) ttACCTGCACCGCTGGCCTCGGTAGCCTCTATCGTTAAAAGTGAAAGTGACAAGCTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTcn < 1:67830/171‑2 (MQ=255) ccTCGGTAGCCTCTATCGTTAAAAGTGAAAGTGACAAGCTGGCCGCGTTTAATGACCCACAACACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTATTGTCCTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCCTATTTCCTTATCCGCCTCGTATCAGGGGCGCCCCCCCTGCCTCACGTATATACTTTTGCTCTTTCg > 1:228023/1‑250 (MQ=255) | GGGCCACGTCTGGACCGGTCAGGATGCAAAAGCTAACGGGCTGGTCGATAGTCTCGGGGATTTCGATGATGCGGTCGCCAAAGCAGCAGAGCTGGCAAAAGTGAAACAGTGGCATCTGGAATATTACGTTGATGAACCGACCTTCTTCGACAAAGTGATGGACAACATGTCTGGTTCTGTCCGGGCAATGTTGCCAGATGCGTTCCAGGCCATGTTACCTGCACCGCTGGCCTCGGTAGCCTCTACCGTTAAAAGTGAAAGTGACAAGCTGGCCGCGTTTAATGACCCACAAAACCGTTATGCGTTTTGCCTGACCTGCGCCAACATGCGTTAAGTCTTGTACTGAGTGGCCGACAGATCGTCGGCCACATTATTTTTTACGTCGACGAATCCTCTTCCCGCTGTTTCGCCCCATATTTCCTTATCCGCATAGTATCAGGTGCGCTCCCCCTGCCTCACGTATATACTTTTGCTCTTTCG > NC_000913/1850360‑1850839 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |