| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,084,753 | G→A | P387S (CCG→TCG) | speA ← | biosynthetic arginine decarboxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,084,753 | 0 | G | A | 84.6% | 16.7 / NA | 13 | P387S (CCG→TCG) | speA | biosynthetic arginine decarboxylase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (7/4); minor base C (2/0); total (9/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGCTAAAGATGCCGGAAGAGTAGCCGATATGAATGTCGTGCAGATCCATCTGACTGTCGTGTAACCATTCACGCAGAGAACGGCGAGTTCCCGGTTCGTGCATCTCCTGCCAGGTTTCCCACATGCTTTGCAGCGCGCGCGGCGCATCTTCTGCAGGCGCGGTCGGCACCGTGTATTCGTTACGTTCCACGCCGATGATATTAGACACCAGCACGGTGTGATGCGCAGTCACCGCACGACCCGATTCGGTGATTACCGTCGGATGCGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGACTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGC > NC_000913/3084588‑3084995 | ggCTAAAGATGCCGGAAGAGTAGCCGATATGAATGTCGTGCAGATCCATCTGACTGTCGTGTAACCATTCACGCAGAGAACGGCGAGTTCCCGGTTCGTGCATCTCCTGCCAGGTTTCCCACATGCTTTGCAGCGCGCGCGGCGCATCCTCTGCAGGCGCGGTCGACACCGTGTATTCGTTACGTTCCACGCCGATGATATTAGACACCAGCACGGTGTGATGCGCAGTCACCGCACGACCCGATTCGGTg > 1:247991/1‑251 (MQ=255) cGATATGAAGGTCGTGCAGATCCATCTGACTGTCGTGTAACCATTCACGCAGAGAACGGCGAGTTCCCGGTTCGTGCATCTCCTGCCAGGTTTCCCACATGCTGTGCAGCGCGCGTGTCGCATCTTCTGCAGGCGCTGTCGACACCGGGTATTCGTTACGTTCCACGCCGATGATATGAGACACCAGCACGGTGTGATGCGCAGTCACCGCACGACCCGAGTCGGTGATTACCGTCGGATGCGGCAGACCg < 1:216891/251‑1 (MQ=255) tCGTGCAGATCCATCTGACTGTCGTGTAACCATTCACCCAGCGAACGGCGAGTTCCCGGTTTGTGCATCTCCTGCCAGGGTTCCCCCATACTTTGCAGCGCGCGCGGCGCATCTTCTCCACGCGCGGCCGACACCGTGTATTCGTTACGTTCCACGCCGATGATATTAGACACCCGCACGGTGTGATGCGCAGTCACCGCCCGACCCGATTCGGTGGTTCCCGCCGGATGCGGCAGAc > 1:134378/1‑238 (MQ=255) gTGCAGATCCATCTGACTGTCGTGTAACCATTCACGCAGAGAACGGCGAGTTCACGGTTAGTGCATCTCCTGCCAGGTTTCCCACATGCTTTGCAGCGCACGCGGAGCATCTTCTGCAGGCGCGGTCGCCACCGTGTATTCGTTACGTTCCACGCCGATGATATTAGACACCAGCACGGCGTGATGCGCCGTCACCGCACGACACGATTCGGTGATTACCGTCGGATGCGGCAGACCGTTTTCTTCACACg > 1:169459/1‑251 (MQ=255) ccATCTGACTGTCGTGTAACCATTCACGCAGAGAACGGCGAGTTCCCGGTTCGTGCATCTCCTGCCAGGTTTCCCACATGCTTTGCAGCGCGCGCGGCGCATCTTCTGCCGGCGCGGTCGACACCGTGTATTCGTTACGTTCCACGCCGATGATATTAGACACCAGCACGGTGTGATGCGCAGTCACCGCACGACCCGATTCGGTGATTACCGTCGGATGCGGCAGACCGGTTTCTTCACACGCATCGcc > 1:207152/1‑250 (MQ=255) nagagAACGGCGAGTTCCCGGTTCGTGCATCTCCTGCCAGGATTCCCACATGTTTTGCAGCGCGCGCGGCGCCTCTTCTGCAGGCGCGGTCGACACCGTGTATTCGTTACGTTCCACGCCGATGATATTAGACACAAGCACGGTGTGATGCGCAGTCCCCGCACGACCCGATTCGGTGATTACCGTCGGATGCGGCAGACCGTTTTCTTTATACGCATCGCCAATCGCCCAGATACTGTTGTTAGCGTAtt > 1:30452/2‑251 (MQ=255) gTTCCCGGTTCGTGCATCTCCTGCCAGGGTTCCCCCATGCTTTTCAGCGCGCGCGGCGCATCTTCTGCAGACGAGGTAGCCACCGTGTATTCCTTACGTTCCACGCCGATGATATTAAACACCCGACCGGGGTGATGCGCATTCCCCGTACGAACCGATTCGGTGATTACCGTCGGATTCGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGACAATGTTGTTTGGGTATTCAtttgggccat > 1:249947/1‑242 (MQ=255) gTTCCCGGTTCGTGCATCTCCTGCCAGGGTTCCCACATGCTTTGCAGCGCGCGCGGGGCATATTCTGACGGCGCGGTCGACACCGTGTATTCCTTACGTTTCACGCCGATGGTCTTAGACACCAGCACGGGGTGATGCGGCGTTACCGCCCGACCCGATTCGGTGATTACCGTCGGATGCGGCAGACCGTTTTCTTCCCACGCCTCGCCAATCGCCCACATAAt > 1:146928/1‑224 (MQ=255) cgtgtgctcttccgtgctctggTTTCCCACATGCTTTGCAGCGCGAGCGGTGCATCTTCTGCAGGCGCGGTCGACGCCGTGTATTCGTTACGTTCCACGCCGATGATATTAGACACCAGCACGGTGTGATTCGCAGTCGCCGGTCGACCCGATTCGGTGATTACCGTGGTATGCGGCAGACTGTTTGCTTCACGCGCGTCGCCAATCGCCCTGTTAATGTTGGTGGCGTATTCATTGAGGCCGTAGTTCan < 1:23927/231‑2 (MQ=255) cGTGCATCTCCTGCCAGGTTTCCCACATGCTTTGCAGCGAGCGCGGCGCATCTTCTGCCGGCGCGGTCGACCCCGTGTATTCGTTACGTTCCACGCAGCTGATATTAGACAACAGAACGGTGTGATGCGCAGTCACCGCACGACCCGATTCGGTGATTACCGTAGGATGCg > 1:182330/1‑171 (MQ=255) tttGCAGCGCGCGCGGCGCATCTTCTGCAGGCGCGGTCGACACCGTGTATTCGTTACGTTCCACGCCGATGATATTAGACACCAGCACGGTGTGATGCGCAGTCACCGCACGACCCGATTCGGTGATTACCGTCGGATGCgn < 1:68950/142‑2 (MQ=255) gCAGGCGCGGTCGACACCGTGTATTCGTTACGTCCCACGCCGATGATATTAGACACCAGCACGGTGTGATGCGCAGTCACCGCACGACCCGATTCGGTGATTACCGTCGGATGCGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTGGTTTCCCTAACTGTCGTACTGCGAACGAGTCCCTTCATAATCCACGCCCAGACCGCCGCCGACGTc < 1:229333/251‑1 (MQ=255) cncgGTCGACACCGTGTATTCGTTACGTTCCACGCCGATGATATTAGACACCAGCACGGTGTGATGCGCAGTCACCGCACGACCCGATTCGGTGATTACCGTCGGATGCGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGACTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGc > 1:198419/1‑251 (MQ=255) | GGCTAAAGATGCCGGAAGAGTAGCCGATATGAATGTCGTGCAGATCCATCTGACTGTCGTGTAACCATTCACGCAGAGAACGGCGAGTTCCCGGTTCGTGCATCTCCTGCCAGGTTTCCCACATGCTTTGCAGCGCGCGCGGCGCATCTTCTGCAGGCGCGGTCGGCACCGTGTATTCGTTACGTTCCACGCCGATGATATTAGACACCAGCACGGTGTGATGCGCAGTCACCGCACGACCCGATTCGGTGATTACCGTCGGATGCGGCAGACCGTTTTCTTCACACGCATCGCCAATCGCCCAGATAATGTTGTTGGCGTATTCATTGAGGCCGTAGTTCACCGAACAGTCGGACTGCGAACGAGTACCTTCATAATCCACGCCCAGACCGCCGCCGACGTCGAAGC > NC_000913/3084588‑3084995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |