| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 860,898 | C→T | G570D (GGC→GAC) | ybiW ← | putative pyruvate formate lyase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 860,898 | 0 | C | T | 87.5% | 16.6 / NA | 8 | G570D (GGC→GAC) | ybiW | putative pyruvate formate lyase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (4/3); minor base G (0/1); total (4/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGTATCGACAGTATCATCGTCGTTGCCGTACTTCGGCGCACCGTTAATCAGCCGCTGACGCAGCTGCTCGTGAGTCAGGCCGTCGAAGTCATCTGCCAGTGCGGCAGCAAGCTGTTGCTGACCAATCGCACCTTGTTCAAACACCAGTTTCTTCACTGCCGCCAGGCTGTTGCCGAGGTTGGCAATGCCGACCTGCAGGCCAGAAACCCAGTCATATTTCGCGCCGCCTTGCTTGATACTTTTCGCTCGCTCAATACAGTCATCCACCAGCGCCGAGCAGAGAATATCGTGCACGTTCTCTTCCAGCATGGTGTCGACGACATATTCGATTTCGATTGATTTGCGGGTGTAGTAACGGATTTGCGTATCCCACGCGTC > NC_000913/860726‑861103 | cGTATCGACAGTATCATCGTCGTTGCCGTACTTCGGCGCACCGTTAATCAGCCGCTGACGCAGCTGCTCGTGAGTCAGGCCGTCGAAGTCATCTGCCAGTGCGGCAGCAAGCTGTTGCTGACCAATCGCACCTTGTTCAAACACCAGTTTCTTCACTGCCGCCAGGCTGTTGTCGAGGTTGGCAATGCCGAcc > 1:3821/1‑193 (MQ=255) cGTGAGTCAGGCCGTCGAAGTCATCTGCCAGTGCGGCAGCAAGCTGTTGCTGCCCAATCGCACCCTGCTCAAACACCAGTTTCTTCACTGCCGCCACGCTGTTGTCGAGGTTGGCAATGCCGACCTGCAGGCCAGCAACCCAGTCATATTTCGCGCCGCCTTGCTTGATACTTTTCGCTCGCTCCATACAGTCATCCACCAGCGCCGAGCAGAGAATATCGTGCACGTtctc > 1:246549/1‑232 (MQ=255) gNNAGTGCGNNAGCAAGCTGTTGCTGACCAATCGCACCTTGTTCAAACACCAGTTTCTTCACTGCCGCCAGGCTGTTGTCGAGGTTGGCAATGCCGAcc < 2:3821/99‑1 (MQ=255) gcagcaAGCTGTTGCTGACCAATCGCACCTTGTTCAAACACCAGTTTCTTCACTGCCGCCAGGCTGTTGGCGAGGTTGGCAATGCCGACCTGCAGGCCAGAAACCCAGTCATATTTTGCGCCGCCTTGCTTGATACTTTTCGCTCGCTCAATACAGTCAGCCACCAGCGCCGAGCAGAGAATATCGTGCACGTTCTCTTCCAGCATGGTGTc < 1:181188/212‑1 (MQ=255) gcaAGCTGTTGCTGACCAATCGCACCTTGTTCAAACACCAGTTTCTTCACTGCCGCCAGGCGGTTGTCGAGGTTGGCAATGCCGACCTGCAGGCCAGAAACCCAGTCATATTTCgcgc < 1:141127/118‑1 (MQ=255) gCACCTTGTTCAAACACCAGTTTCTTCACTGCCGCCAGGCTGTTGTCGAGGTTGGCACTGCAGACCTGCAGGCCAGAAACCCAGTCATATTTCGCGCCGCCTTGCTTGATACTTTTCGCTCGCTCAATACAGTCATCCACCAGCGCCGAGCAGAGAATAACGTGCACGTTCTCTTCCAGCATGGTGTCGACGACATATTCGATTTCGATTGATTTGCGGGTGTAGTAACGGATTTGCGTATCCCACGCGTc > 1:188790/1‑251 (MQ=255) ccTTGTTCAAACACCAGTTTCTTCACTGCCGCCAGGCTGTTGTCGAGGTTGGCAATGCCGACCTGCAGGCCAGAAACCCAGTCATATTTCGCGCCGCCTTGCTTGATACTTTTCGCTCGCTCAATACAGTCATCCACCAGCGCCGAGCAGAGAATATCGTGCACGTtct < 1:57714/169‑1 (MQ=255) ccTTGTTCAAACACCAGTTTCTTCACNGCCGCCNNGCNGTTGTCGAGGTTGGCAATGNCGNNNTNNNGNCCAGANACNNAGTCATATTNCGCGCCGCCTTGCTTGATACTTTTCGCTCGCTCAATACAGTCATCCACCAGCGNCGAGCAGAGNNTATCGTGCACGTtct > 2:57714/1‑169 (MQ=255) | CGTATCGACAGTATCATCGTCGTTGCCGTACTTCGGCGCACCGTTAATCAGCCGCTGACGCAGCTGCTCGTGAGTCAGGCCGTCGAAGTCATCTGCCAGTGCGGCAGCAAGCTGTTGCTGACCAATCGCACCTTGTTCAAACACCAGTTTCTTCACTGCCGCCAGGCTGTTGCCGAGGTTGGCAATGCCGACCTGCAGGCCAGAAACCCAGTCATATTTCGCGCCGCCTTGCTTGATACTTTTCGCTCGCTCAATACAGTCATCCACCAGCGCCGAGCAGAGAATATCGTGCACGTTCTCTTCCAGCATGGTGTCGACGACATATTCGATTTCGATTGATTTGCGGGTGTAGTAACGGATTTGCGTATCCCACGCGTC > NC_000913/860726‑861103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |