| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 313,745 | C→T | intergenic (‑503/‑1546) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 313,745 | 0 | C | T | 91.7% | 19.9 / NA | 12 | intergenic (‑503/‑1546) | ykgR/insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (6/5); minor base G (0/1); total (6/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCTATTAAACCGTCAACTATGCCGGATACATACTGGATTACACTGCAGGCACGCCTTATGAGAGAACGTGCCGCAGTGACGGGTTAATTATCTGAAAGAATTTGTGAGGCTGTATCGGTTACTCATTGATTTGATAGTTTTACTCTCGGGAGAATAATAGATATTTAATCCATTAACGGAAACCAGCCAGTTCCTTTCGATGCCTGAATTTGATCCCATAGTTTATCCGGAATGGTTAATTCATGAACAAGTTGTGTTATCGTTCATGAGAAGCATAACGTAAAGGGAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGAT > NC_000913/313552‑313929 | tCTATTAAACCGTCAACTATGCCGGATACATACTGGATTACACTGCAGGCACGCCTTATGAGAGAACGTGCCGCAGTGACGGGTTAATTATCTGAAAGAATTTGTGAGTCTGTATCGGTTCCTCATTGATTTGATAGTTTTACTCTCGGGAGAATAATAGATATTTAATCCATTAACGGAATCCAGCCAGTTCTTTTCGATGCCTGAATTTGATCCCATAGTGTATCCGGAATTGTTAATTCATGAACaa < 1:81671/250‑1 (MQ=255) ngCCGGATACATACTGGATTACACTGCAGGCACGCCTTATGAGAGAACGTGCCGCAGTGACGGGTTAATTATCTGAAAGAATTTGTGAGGCTGTATCGGTTACTCATTGATTTGATAGTTTTACTCTCGGGAGAATAATAGATATTTAATCCATTAACGGAAACCAGCCAGTTCTTTTCGATGCCTGAATTTGATCCCATAGTTTATCCGGAATGGTTAATTCATGAACAAGTTGTGTTATCGTTCATg > 1:26113/2‑249 (MQ=255) ggATTACACTGCAGGCACGCCTTATGAGAGAACGTGCCGCAGTGACGGGTTAATTATCTGCAGGAATTTGTGAGGCTGTATCGGTTACTCATTGATTTGATAGTTTTACTCTAGGGAGAATAATCGGTATTTAATCCATTAACGGCAACCAGCCAGTTCTTTTCGATGACTGAATTTGATCCCATAGTTTATCCGGAATAGTTAATTCATGAACAATTTGTGTTATCGTTCATGAGAAGCATAACGTaa > 1:33709/1‑249 (MQ=255) ncAGGCACGCCTTATGAGAGAACGTGCCGCAGTGACGGGTTAATTATCTGAAAGAATTTGTGAGGCTGTATCGGTTACTCATTGATTTGATAGTTTTACTCTCGGGAGAATAATAGATATTTAATCCATTAACGGAAACCAGCCAGTTCTTTTCGATGACTGAATTTGATCCCATAGTTTATcc > 1:159550/2‑184 (MQ=255) gTGCCGCAGTGACGGGTTAATTATCTGAAAGAATTTGTGAGGCTGTATCGGTTACTCATTGATTTGATAGTTTTACTCTCGGGAGAATAATAGATATTTAATCCATTAACGGAAACCAGCCAGTTCTTTTCGATGCCTGAATTTGATCCCATAGTTTATCCGGAATGGTTAATTCATGAACAAGTTGTGTTATCGTTCATGAGAAGCATAACGTAAAGGGAAAAGCTCGATTAGACGGCAGAATTTGTCAg < 1:83330/251‑1 (MQ=255) anNNNNCTGNAAGAATTTGTGAGGCTGTATCGGTTACTCATTGATTTGATAGTTTTACTCTCGGGAGAATAATAGATATTTAATCCATTAACGGAAACCAGCCAGTTCTTTTCGATGCCTGAATTTGATCCCATAGTTTATcc < 2:159550/143‑1 (MQ=255) gatttgatAGTTTTACTCTCGGGAGAATAATAGATATTTAAGCCATTAACGGAAACCAGCCAGGTCTTTTCGATGCCTGAATTTGATCCCATAGTTTATCCGGAATGGTTAATTCATGAACAAGTTGTGTTATCTTTCATGAGAAGCATAACGTAAAGGGAAAAGCTCGATTAGACGGCAGAAGTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTTAGTGTTGCGATTTGTAGTGCAAGGTCGan < 1:64321/251‑2 (MQ=255) atttgatAGTTTTACTCTCGGGAGAATAATAGATATTTAATCCATTAACGGAAACCAGCCAGTTCTTGTCGATGCCTGAATTTGATCCCATAGTTTATTCGGAATGGTTAATTCATGAACAAGTTGTTTTATTGTTCAAGAGAAGCATAACGCAAAGGGAAAAGCGCGATTAGACGGCAGAAGTTGTCAGGGGTTATGAAc < 1:234071/201‑1 (MQ=255) gatAGTTTTACTCTACGGAGTATAATCGATATTTAATCCATTAACGGAAACCGGCCAGTTCTTTTCGCTGCCTGCATTTGCTCCCATCGTTTTTCCGGCATGGTTAATTCATGAACAAGGTGTCTTCTCGTTAATGAGaa > 1:34886/1‑140 (MQ=255) cGGAANNCANNNAGNNCTTTTCGATGCCTGAATTTGATCNCATAGTTTATCCGGAATGGTTAATTCATGNANANGTTGNNTTANCGTTCATGAGNAGCATAACGTAAAGGGAAAAGCTCGATTAGACGGCAGAATTTGTCAGGNGNTATGAACGAAATTCATAAATCTGTTTGAg > 2:188450/1‑175 (MQ=255) cGGAAACCAGCCAGTTCGTTTCGATGCCTGAATTTGATCCCATAGTTTATCCGGAAGGGTTAAGTCATGAACATGTGGTGTTATCGTTCATGAGAAGCATAACGTAAAGGGAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAg < 1:188450/175‑1 (MQ=255) ncagccagTTCTTTTCGATGCCTGAATTTGATCCCATAGTTTATCCGGAATGGTTACTTCATGAACACGTTGTGTTATCGTTCATGAGAAGCATAACGTAAAGGGAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCacg > 1:30316/2‑188 (MQ=255) | TCTATTAAACCGTCAACTATGCCGGATACATACTGGATTACACTGCAGGCACGCCTTATGAGAGAACGTGCCGCAGTGACGGGTTAATTATCTGAAAGAATTTGTGAGGCTGTATCGGTTACTCATTGATTTGATAGTTTTACTCTCGGGAGAATAATAGATATTTAATCCATTAACGGAAACCAGCCAGTTCCTTTCGATGCCTGAATTTGATCCCATAGTTTATCCGGAATGGTTAATTCATGAACAAGTTGTGTTATCGTTCATGAGAAGCATAACGTAAAGGGAAAAGCTCGATTAGACGGCAGAATTTGTCAGGGGTTATGAACGAAATTCATAAATCTGTTTGAGTGTTGCGATGGGTAGTGCAAGTTCGAT > NC_000913/313552‑313929 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |