| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,783,717 | G→A | S238F (TCC→TTC) | ypjB ← | DUF5508 domain‑containing protein YpjB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,783,717 | 0 | G | A | 80.0% | 10.5 / 0.3 | 10 | S238F (TCC→TTC) | ypjB | DUF5508 domain‑containing protein YpjB |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (3/5); total (4/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.38e-01 | |||||||||||
TCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTCACAACAGGACTATTCTCAACGGGATCATCCTCAGAGGAACTATCATCAAAGTCATCATCCATAAATAAAATATCATCGAATGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTTCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCAAACAATGACGTTCCCC > NC_000913/2783572‑2783921 | tcaatcaaTAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTCACAACAGGACTATTCTCAACGGGATCATCCTCAGAGGAACTATCATCAAAGTCATCATCCataaataa > 1:11352/1‑177 (MQ=255) nnnnnntaNNNNNTGTNTCAATCTACGTTATTACCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTGTCAGATCTTGATACAACGGGACTAGTCATTACAGGATTATTCTCAACGGGATTATCCTCAGAGAAACCatcac < 2:150573/144‑2 (MQ=255) tattatCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTCACAACAGGACTATTCTCAACGGGATCATCCGCAGAGAAACTATCATCAAAGTCATCAGCCATAAATAAAATATCATCGAATGGTGCCACGCCCGTTATGAGTGTTATTTTATTACTACGATCAGTCAATACTCCACTTAAACCGTTTTCGc < 1:85223/227‑1 (MQ=255) aaaaaTTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTCACAACAGGACTATTCTCAACGGGATCATCCTCAGAGAAACTATCATCAAAGTCATCATCCATAAATAAAATATCATCGAAGGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATAc < 1:106532/193‑1 (MQ=255) ncTTTTAGAACTTGATACAACGGGACTAGTCACAACAGGACTATTCTCAACGGGATCATCCTCAGAGACACTATCATCACAGTCATCCTCCATAAATAAAATATCATCGAATGGTGCCACGCCCGTGATAAGttttatt > 1:33394/2‑139 (MQ=255) gNNTTTAGANNTTGATACAACGGGACTAGTCACAACAGGACTATTCTCAACGGGATCATCCTCAGAGGAACTATCATCAAAGTCATCATCCataaataa < 2:11352/99‑1 (MQ=255) tGATACAACGGGACTAGTCACAACAGGACTATTCTCAACGGGATCATCATCAGAGAAACTATCATCAAAGTCATCATCCATAAATAAAATATCATCGAATGGTGCCACGCCCGTGATGAGttttattt > 1:131197/1‑128 (MQ=255) cGGGACTAGTCACAACAGGACTATTCTCAACGGGATCATCCTCAGAGAAACTGTCATCACAGTCATCATCCATAAATAAAATATCATCGAATGGCGCCACGCCAGTGATGAGTGTTATTATATTATTACGCTCAAGCAATACTCCACTTAAACCGTTTTCACTCACCAGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCACCATCAAACACTGACGTTccc > 1:173305/1‑251 (MQ=255) gggACTAGTCACAACATGACTATTCTCAACGGGATCATCCTCAGAGAAACTATCATCAAAGTCATCATCCATAAATAAAATATCATCGAATGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTTCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCAAACAATGACGTTcccc < 1:22711/251‑1 (MQ=255) cacaACAGGACTATTCTCAACGGGATCATCCTCAGATAAACTATCATCAAAGTCATCATCCATAAATAAAATATCATCGAATGGTGc < 1:190231/87‑1 (MQ=255) | TCAATCAATAATACATATTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTCACAACAGGACTATTCTCAACGGGATCATCCTCAGAGGAACTATCATCAAAGTCATCATCCATAAATAAAATATCATCGAATGGTGCCACGCCCGTGATGAGTTTTATTTTATTATTACGATCAGTCAATACTCCACTTAAACCGTTTTCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCAAACAATGACGTTCCCC > NC_000913/2783572‑2783921 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |